RNA id: TCONS_00068049


Basic Information

Item Value
RNA id TCONS_00068049
length 8462
RNA type mRNA
GC content 0.42
exon number 33
gene id XLOC_034987
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41632928 ~ 41693004 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTATGTCTGCCGGTgtttttgcttaattttatttctaaaggagctgctgaTTTATCTGTCAGAGAGCTCAATGAGGGTGTTCTTACAGGCCTCATTTCTGCTGTTTGTCCTGGCGAATGTTTTATCTGCGCCATGTTCACCCGAGCAGTTTACCTGCGCGAGAGGTGGCTGCATTGATGAGGAGCAAGTCTGTGATTTCAGAGAGAACTGTGAAGATGCCAGTGACGAGATTGACTGCTCCCAGGTTGTGAGATGTGACTTTCAAGAAGGTTTCTGTGATTTTCAACTTCAAAACGAGCATCATGTTTGGTTAAGAGGCTCAGGTTTGAGCTTGCCTAACACTGAGACAGGCCTTAAAGAAAATGTTACTGGTCACTGTCTCTACATACGCTCTAACAATGGGGAAGGAGTCACTGCTGAATTATACAGTCCTCTCTTCAAGTCTTCAAACACATGTTGGCTAACTTTCTATCGTCATATTGGAATGCTGGCAGGGGCTTTGCAGGTTCTGATCCAGTTCAGATCTTCAGGAGAGATGCAGGAGGTCTGGTTTCTGCCCACCTCCAATCCTGATCCATTCACTCTTCCCTGGATGCGGACAGTGGTGATGTTAAACAGCACAGAGGATTTTAAGGTTGTGGTTAGAGGATTGATATTCAACAGCAGTGATCCACATGAGGTCGTAGCAATTGATGATCTGTCCTTCAGCAGAGGATGTGTGCCTGTTGTAGagaCTGACAGTAAGGCATCTCTTCCAACTCAGTGCCTCCCGTCTCAGTTTCACTGTGGGGCAGATGTCTGTGTGGACGGGATGAAAGTCTGTGACTTTTCTTTAGACTGCCCCAATGGAGAGGACGAGGCCAACTGTTCGGCGCAATGTGATTTTGAGTCTGACTCTTGTGGCTGGTATGAGTTCTTCCTGGGTGATGGATTTGAATGGGTAAGAGGCTCAGCTAATGGAGTCTTCACAGAACACCTAGACCAAACACCTCCACAGGACCACACTACCAATACAAGTGAAGGACACttcatgtttattttcaaaaagagTAGCAGGTTTTCCCAGCAGGCATTGCTGCGTAGTCCCACATTCCAGCAAAGCGGTTCAGATTGTGTCATGACCTTCTGGCATTATAATTCTGGCCATTCAGTTGGTGCTGCTGAAATGCACCTGCTGATAGATGGCTCAGACAGTATCACTACACTTTGGCAAACACTTTACAACCAAGGTAACCAGTGGCACCCGGTAGTTGTCCAGATCGGCAGACAGAACAGGCCTTTCTACATCTCCTTTGCCAAACTGAGCCTGGCTGTTTATGAAGGCGTCTCTGCTCTGGACGATATTATATTCCACAACTGCTCACTGCCTGAGGCTGTGGAGACGTGTGCCACTCCTGATCACCTTCACTGCGGTCAGAGCAAAGCCTGTGTGAGCTATTCTCAAATCTGTGACCTGATCGATGACTGTGGAGATGGAACAGACGAGGAAAACTGCTTGCCAGAGCTAATGTGTGACTTTGAGGAAGGTCTGTGTAACTGGACTCAGGATCACGAGGAGGACATGTTTGATTGGACGCACATACAAGGCCCTACTCCAACGTTCAACACAGGCCCGTGGAAGGATCACACACGAGCCAGTGCAGATGGGCACTTCCTCTATATCGAATCTTCAGACCCTCAGAAGTTCAAAGACACTGCCGTTCTGATCAGTCAGCCTTTTCTGCCGACTCCTCGCCGGGGTCCTGAACCCAAACCACCCTGTGTTTTCAGATTTCATTATCACATGTTTGGTCAGCATGTGTTTTGTTTGGCTGTATACATGCGCACAAGCAACAGTGGACGAGGAAACCTGTTGTGGGTTCGATATGGTGACCAGGGCAACTTTTGGCACAGGACAATACTGGAGATCAACAGCAGCCACCACTTTCAGATTTTAGTAGAGGGGACTGTTGGCGATGACTTTAGAGGAGACATTGCCATAGATGATCTGTCTTTTTATGGCTGTCAGTCCTATGAAGGAGAACTGCCCTTGGAGGAGCCCAGCACCTCTGCCCCTGTGCCCACCTTGTCAACAGCACCATCTCATAGCTGCCCTCCTGACCAGTTTGTGTGCCTAACTACAAGAGAGTGTGTGAACCTCAGCCAAGTGTGTGACTTCAGACCCGACTGCTCCGATAGCTCTGATGAAGAGCTCTGTGTGAAAGAGTATTGTGATTTTGAAGGTGACAGTCTTTGCGGATGGTATTTGAGTGAAATACCTCCTCACGCCTTTAGCTGGCAGACGGGACAAGGGTTGAGTATTCACCATGGAGAAGAGAAGCACAGACCTGCTAATGACCACACACTTGGATCTCCAGAGGGTTGGTATGTATTTGTGGACAGCTCCAACGGAGGATACGGTCACACCACTGATCTCCTGACCGCTCCCATCAAAATAACAGGGCCCCAGTGCACTCTGGAGTTCTGGTATCACATGAGTGGCTTCACTGTAGGATCGCTGCAGGTCCTCATCAAATCAGGTGCTGTCGCATATGAAGTGTGGTCTCAAAGTGGTAGCCAAGGCAACAGCTGGAGGCGGGGTGAGGTCTTCATAGGAATCCGTCATAACATCCAGGTGGTTCTTCGAGCAAAGCGGGGCATCAGCTACATGGGCGATGTTGTTGTTGATGACGTGGCATTTGTGGACTGCGCCCCTCCAGTTATGTCTGATCTCCCTTGTCAAAACAACGAGTTCATCTGTGCCAATGGTCACTGTATAAACGAGGCCAACTTGTGTGACTTTATTGATCACTGTGGAGATGGATCAGATGAGAATCATTACATTTGCAagGGATTCAGTGGTCGTTGTAATTTTGAGTTTGACCTTTGCTCCTGGAGACAGAGCCAAGATGATGACTTTGATTGGTTGATAAAACCAGGAAATATGAACACACATGGGATTGGACCATCCACTGACCACACCCTCCGCAACCCATCAGGCCACTACTTGTATCTAGAAGGGTCCTTTCCGCAGACAACTGGACATACTGCCAGAATCTTTGGACCTCTTTTCCGTCGTTGCAGCAAAGATTGTAAAATGGTCTTTTACGTCCACATGTCTGGTGATGGCATCGGCACTCTGAATGTGTACATGTCTTCAAACTCCAGCAACTCATTGTTACTCAACCTCATTGGAAATCAAGGCAACTACTGGAGCAGACAGGAAGTACCACTTGCATCTTCTGATGACTTCCGCATTATGTTTGAAGGCAAAGTGGGTCGCAATACTGGAGTTCACATCTGCCTGGATGACATCACCTTTTCTTCAGACTGTATTCTTAGTAACACATTTGAGAAGGAGTCCCGGTTACTCACAGGATCCTGTCCATCAGGTTCTTTACAGTGTGACAATGGCAACTGCTACAAGCCAGAGCAGAAATGTGACTTTACTGATGACTGTGAAGATGGAACTGATGAACTGGAGTGTGGGACGTCCTGTTCATTTGAGCATGGGCGCTGTGGATGGAAGAGTAGTCTAGCAGGCACTTTCAGTTGGGCTCTTGGAGTCGGCTCCATTCACATGATCAGACCTCCTCATGACCACACTCTTGAAAATGAAATTGGAAACTTTGTATATCTGGCAGCCACTCCTGTGGGACTGAAGGGTGATAAAGCTCACATGAGAAGCTCTGTGTGGAAGCAGACTAGTGCCACATGCAAACTTGCCTTCTGGTACTACATTTCTGAGAAAGCCACAGGAATCATCCGGCTCTTCATTAAGACTGAAAATGAGCTGAGGGAGGTGTGGACGGAGCGGCAGATGCACAGAGAATGGAGAAGAGCAGAAGTGTCTCTAAAAAATTTGAGAAACTTCATCCTCATATTCGAAGCGGTTCGAACACGAGATGTGAGCGGTGGAGCGGCTCTGGATGACCTGCAGTTCATTGACTGTGCACCTCAAGCTGTGAGTCCTGGTTCATGTCCTGCTATCACAGACTTTTTGTGTAATAATGGAGACTGTATTGAATATCATTTGGAGTGTGATGGTAAAGCTGACTGTTCAGATGAGTCAGATGAGATAGACTGCTTGAATGTTCCAGGAGCTTGTAATTTTGATATGCCGAGTGGCCATTGGGAGGATATCTGTCACCTATCTCAGGACCCTAATGATGACTTCAAATGGGACATAGGCTATGGCACAATTAATGGGACAGGGCCATCAGCTGACCACAGCCCTAGTGGAGCAGGAGGGTTTCTGTATGTGAACGCCAGTGGTCGGAGAGAAGGAGATATCGCCAGCCTATTAACCCAGCAGGAGTTTCCTGCTAGTGTCGGTATCTGTCATCTGCGCTTCTGGTTCCACATGTATGGCTCACATCACATGGGCGCGCTGAAGGTGTACACAGTGGGCCGCAGTGGAGCACCCCTGCTAATGTGGGCAACCTGTGGAAACCATGGAGACGGCTGGCATTATGCTAATGTGATCTTATCAAACGCGTCACCGTTCAAAGTGAGCATTCAGGCAGTAGTGGGAGCTGACAAGTGGACGGACATTGCAGTGGATGACTTCTCTTTCACTCGGCAATGTCTTCTTGGAGGTCCAGTGACCCCCATCCCACAAACGTGCCACATAGAGCACTTCCAGTGTTTGTATCTGTTCGAGTGTATACCACTGAGTTGGCACTGTGATGGTGAGGTGGACTGTCTGGACCACTCAGATGAGGAGAAGTGTGCCAGTGTGCTTCCTGGCACTGTGCCTCCTCAAACCGGGTGCGAGACAGGCGAATATCAGTGCATGGACAGCAGCTGTATTCCTGCGCTACTGCGGTGCGATTCGGTTTTAGACTGTCCAGATGGAGAAGATGAATACGGATGCCCTGTGAAGACATGCGATGATGGAGAACTTGTGTGTGAGGCGACGGCAGACTGTGTGGCGTATCAGAATCGATGTGATGATATTGTTGACTGTCCTCCGTTTAACTCTGATGAGTCCAGCTGCTTTGAGTGTCCCTTTGGATATTGTCTCAATGGAGGCAGATGTGCTGTAGAGGAAAATGGACCAGTGTGCTTTTGTCCATCACAGTGGACTGGTAATCGTTGTCATATCAAAGAACAAGCATTCACTCCCACGCCACCTGTGATGGCAGATAGTAAACTAGCTGTCAGTGCTGGATTAAGCGCAGCAGTGATTCTGGTGGTGATCGCAACGGGAGTCGTTTTGTTCTGGTTGTTTCAAAAGAGGCATTCGCTAAAAGACTCCAGTCTTATTGATAACCAAGAGTTGGATGACTCAATTTATGACTTGCAGAAAAAGGAGTCATTTAGGAACATTAGATCTAGGAGGCCTGTACATCCCCAGTTAAGTATCAGTGTTTACCCATGGAGCGAAGATCCAAAGGTATCCAGCTCAAAGGCAAGCAGGCTGTCTTTCTGCAATCCTCTCTACAAGAGCTCAAACAGCTCTGAAGCCTGAAGAAAACAGACACGCGAACACTGGCCGTCCCGTCCCTATAGGTTTAGTGTGCTTTCCACCTCATTTGAGTCTCCTCAACAACATAGCTGTGCTTGCTTAAGGTTTAgaggctgatttttttttttaacacaaactcATGGGAGGGAAAATGTGACCACAAATAAGTTCCAATTAAGCAAAATGAAGCAGTTAAACTACATCGCTCTTAAAAAGAAAGATTTACTTATAAGAGTCGGTGACATATAACACGTTCCATATGTTGTATAGTCTCTCAGAGGACCTGAAATTAAATTTCCAACTTCTTATTTTACCAGAGCCAACACTTTATGTTAGTGCTTGTTTTACATAATGAGCTCTGCTGATAGATGCCTGCATTTGTTCAACAGCTTAAGTAACATTGATATACAGTACAGTGCTggccaaaacaaatgttttttgtagcaaattgttttgtttgttttattaaatttaccaAACAATGACTGAGAAAAAGAAGAGAAGCATAACTTTATTAGATTGAAGTCTTTAGGATGAGCGCAATTTAACATTAATGGCAAAAGATTTATCAAAAGTAGTCTGGACTCTGAGCGCCATTTCGAAGATTGTTTTGCTTTCAAAGCATGCTCTCCTTCAAAATCTCTGTGGTTTAGAGAATATTGTATTTTCATTACTTCAAATGTGCTTTCGATCACCACTTGGTCTCATTTCAGATTCCATCTGACCACATTTTGACAGTTGATAAAATCGAAAGCTATAATGAtacaaaaacatgaacaaagacaGGGTGAAGTTgactgtgcatgtgtgtttttagtgaaaatgaaaattctccTCAGTACCGGAACAGTGTAACAAAAGCTGTAAGAAGATGAACTCTAGTGACATATGAAATGTTTTAGTATTGCAAACCTTCAAACTAAGGAGTTTGTAATCCTGCATTTTTCCCCAAGTGAAAACAAATGCTGTGAGGATTTATAATAGCACAAAAGTGATGTACAATGAAACACGATCAAATGCAGATGAGTTATTCAATAAATGTGTCATTGTTCAGACTGTTGCGCTGTATTTGACGCTGGTTTTAGAATTATGTGTCCATTAAAAAACATACAAAGGGGATTTCTGAAATGTGCTACACATTACATGAGCATCAATAGGATCCTCTCATTATGTTTTGTCTGGAGACGCCATCCCACTATCACTAAGAAATATGTTATTGAACTTTTGTACACAACTTCTAAACATTTAGCATAGACACAGTAAATCAGTGTACAAAACCAGGGCCCATTACCACATTGAGCGAGACAAGTATCAGAAGCATCAGTTTAACATCTGCTTAACAATGAATGACAGAAGTAAGATTTAACCCTGATGTACTgttagggatgttttcatccactctggggtaatTATgggtcttaatttggccataactttttctgtgtttcataTTTAGAGACAATGCTTTGAAGTTTTTTAGATAACTCGATGCACTTTGGGGAAATGAACTACACTTTTGTTAGGTTAGGGATAAAAACaaccactaaattaaactgctgtaaaaatgcatcagataaatttttttttttttttttgcataaatctgttaatcaacctcagtcctaatcaaaactactaaattgttaaaaaaaaaaaatgttaatgctttaattgccaaattcataaatgacatTACTGATTtggttgaagttttttttttttaccttttatcaaagtcttggacaacATTGCCTTTGTTGCTGTGTTATTGCTTTGTTGCTGTGCCATTATaacctaattttttttaattacaaaaccgTATAATCATGAATTTTTTATTGTTGGTGGATTTCGCTGTAGGGAGgaggtaaaatttgtaattttttcatttgatcatcagttggcaccttTAAACCTTTAGATAAACctgtgcaaaaaaagcttagtttctagattttatatggagtataaaaGCAAGTTAAAGTGAGTGAATGTGATCTTtacgcacttaccttgatgtttCTGagtaaatcaaaatatatatctcagcatcatcaaatgtggttataatggaagtcaatggggcaaaaacagccaccaacagtaaattagggtgaaaaaaatgaaaatgtaaaaatgcatcaaagccaatgttgttactaattgtTCATTTCAAAGACTGTGATATGAGGTTtgaaaaatccagtccacaattgctttttaaattgaaaaaacatcattttaatgtttttttttcattaaatcagtgacatcatttgtgaactttacaattaaagagttaaaatcatgCAGTTTTCTAAGAAAtgtagtagttttgatcaggactgaggttgattaacagatttatgaaaaaaaataacagcagtttaattcagtggatgttttcatccatagcaaaagggtagtaaatttgaacagtgcacaagggttaactaTTCGAATCTTTAATAtatcacagctttttttttttagcactgaGATGTTAAATACTACAATAGTGATACTGTGACTTTTCAtcaatttttgtcttttttaattaatatagtacactgttaacattttcctgtagaatctacagtaacttactggcagcacttcaccagtaacttactgtaaataaattacagcaaaaaagttttatttacatctacagcaccatttatcttgcagaatatgtatttacagtaatgTAAATCTTTacatgtaaaatttacagtagtTTTCACAAAGCAACTTTAAAATAGttacatactgcataactgtcctaaagTAAAATACAGCTCATATTACCGTTCAATACAAAAATTGCTAACAGTGTATCATTTACAGTATATGATTCATGTAAAACCGCACTGAATGTATTGTGATTAAGGTATGTTTagcttttttactttaaaattattactacataaaactttttcatttaatgacatgtttgatgcttttaaaatatgcttttaaaatgacTATATAAAATATCTAAAGTTAATAT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-140106-257 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MALRD1 (MAM and LDL receptor class A domain containing 1).

Ensembl:

ensembl_id ENSDART00000121509

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068048 lncRNA downstream 5021 41574545 ~ 41627907 (-) True XLOC_034986
TCONS_00068045 lncRNA downstream 134840 41496364 ~ 41498088 (-) True XLOC_034984
TCONS_00068044 lncRNA downstream 136198 41496259 ~ 41496730 (-) False XLOC_034984
TCONS_00068042 lncRNA downstream 137661 41491504 ~ 41495267 (-) False XLOC_034984
TCONS_00069277 lncRNA downstream 229172 41401488 ~ 41403756 (-) False XLOC_034982
TCONS_00068690 lncRNA upstream 14536 41707540 ~ 41709193 (-) True XLOC_034988
TCONS_00068053 lncRNA upstream 71300 41764304 ~ 41765104 (-) False XLOC_034990
TCONS_00068054 lncRNA upstream 71928 41764932 ~ 41777228 (-) False XLOC_034990
TCONS_00068056 lncRNA upstream 112082 41805086 ~ 41812355 (-) True XLOC_034990
TCONS_00068061 lncRNA upstream 182843 41875847 ~ 41881168 (-) True XLOC_034992
TCONS_00068046 mRNA downstream 4972 41517173 ~ 41627956 (-) False XLOC_034986
TCONS_00068047 mRNA downstream 78881 41519780 ~ 41554047 (-) False XLOC_034986
TCONS_00068041 mRNA downstream 119929 41491493 ~ 41512999 (-) False XLOC_034984
TCONS_00068039 mRNA downstream 142931 41439136 ~ 41489997 (-) False XLOC_034983
TCONS_00068038 mRNA downstream 143106 41439136 ~ 41489822 (-) False XLOC_034983
TCONS_00068050 mRNA upstream 20916 41713920 ~ 41726657 (-) False XLOC_034989
TCONS_00068051 mRNA upstream 23081 41716085 ~ 41746427 (-) True XLOC_034989
TCONS_00068052 mRNA upstream 64458 41757462 ~ 41812355 (-) False XLOC_034990
TCONS_00068055 mRNA upstream 98518 41791522 ~ 41812015 (-) False XLOC_034990
TCONS_00068057 mRNA upstream 128307 41821311 ~ 41851605 (-) False XLOC_034991
TCONS_00068043 other downstream 139797 41493017 ~ 41493131 (-) True XLOC_034985
TCONS_00068036 other downstream 216621 41414590 ~ 41416307 (-) True XLOC_034982
TCONS_00068023 other downstream 683738 40948875 ~ 40949190 (-) True XLOC_034975
TCONS_00068010 other downstream 1081874 40538570 ~ 40551054 (-) False XLOC_034968
TCONS_00067999 other downstream 1916855 39715712 ~ 39716073 (-) True XLOC_034962
TCONS_00068069 other upstream 460406 42153410 ~ 42153524 (-) True XLOC_034997
TCONS_00068070 other upstream 597974 42290978 ~ 42291094 (-) True XLOC_034998
TCONS_00068072 other upstream 1119051 42812055 ~ 42812169 (-) True XLOC_035002
TCONS_00068074 other upstream 1639624 43332628 ~ 43332742 (-) False XLOC_035005
TCONS_00068078 other upstream 1870120 43563124 ~ 43563240 (-) True XLOC_035008

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_12792682_12819124.mRNA True 4273 mRNA 0.49 24 CI01000026 12792682 ~ 12819124 (-)