RNA id: TCONS_00068050


Basic Information

Item Value
RNA id TCONS_00068050
length 3207
RNA type mRNA
GC content 0.43
exon number 6
gene id XLOC_034989
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41713920 ~ 41746427 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgtacaacAGAGAGAGTGATCGCTTATTTTTTATCCAGCAGCAGCAGCGTGCTGCCGTGAGCTCCGTGTGCCTCAATTTTACTCCAATGAGCTCTTATGTCTTACCATTTACACCCGTGTCCAGACAAGTGGAGCCGGTGTGCGTTTTGCAATTTGTCTTTAAGGAAAATGTTGATGAGCTCAGAGTGATCTGGGAAGTGAAGAAGACGCTTTTGTTTTGGTTAACGATGTATCCGCCGTACTCGCGTCTGTCGCACACTTGATCTGACCGCACGAAAGAAGAGCTGTTCATCTTAACCTACCTGTGTGAAAACACCgcgaacacacacagacagagggACGCTCGGACAGACGCAGAGGCGTGTGGTGAGTGCTCTTAACCGCATGGCGAGAGCGGGTTTATAAAGAAATAACGGCTCCACGGACAGCTGCTGTAGGCCTCTCCGCAAAACTAGCCCTCGCTGGACACGGCCTCTCACCCACCAGAGAAATGGGTCTAATCTTCGCCAAACTATGGAGCTTCTTTTGTAATCAAGaacacAAGGTGATTATTGTGGGATTGGACAACGCTGGGAAAACAACTATACTTTATCAGTTTTTAATGAATGAGGTGGTGCACACATCTCCTACGATTGGCAGCAATGTGGAAGAAATAGTGGTGAAGAAAACCCACTTCCTGATGTGGGATATTGGTGGTCAAGAGAGTCTCCGCTCTTCCTGGAACACATACTACTCCAACACTGAGTTCATCATACTGGTAGTGGACAGTACGGACAGAGAGAGACTAGCCATTTCAAAAGAAGAGCTTTACAGAATGCTTGCGCACGAGGATTTGCGCAAAGCTGCAGTGTTGATCTTTGCTAATAAGCAGGACATGAAAGGATGTATGTCAGCAGCAGAGATTTCCAAATACCTGACACTCAGCTCCATCAAGGATCATCCATGGCACATCCAGTCCTGCTGTGCGCTCACTGGAGAAGGGCTGTGTCAAGGTTTAGAATGGATGACCTCGAGGGCTGGACTCAGATAGCCTCTGCTTTTCTGGCTAGACTGATTGACAGTGATTTCCACCTCCTCAGGTGGCATCGCAGACTCATCTCATCGGCTgcttaccttttatttttaatctgtcgGTCAGAATTGACACTATGCAGCTGAACTGTCTGGACACCTACCTCAGCTGGGATTTAACGGTAACGTGAATCTGGTTTGATGGATTTGTCGATCAGTACTAAATCAGGAgcaaatggattttttttactgGGTGTATAGCAGAGGATATTCAAAGTCCAAAGTGTTTCAGCCTAACAAGAGGCACTACAGTGTCTGGCGTTTGTTTATGAGTTTTTAACACTGCCGATGGAGCAGAAGTTCTCTGGAGGGGTTTATTAAGCTAATCATGTAAGTTTTTCTTCCAATCTAATGGGAGGAAAGGATTTGAATGATCTGGTACTTTTCAAGTGTGGCCATTTAGTCCATTGTTGTCGTTTTCGGGTCTGTTGTTCTCAGCTTTTTTGGGATAATGAGTTTTAAAAGTGCCATTTGCTACCCACCAACACCACTAGCACTACATATCAAGGAAATGCCTGAACATATCATTTGACTCGGGCCACATTACCTCAGTCATTAGTTACAATAGAGGGTGCTGTTAGACTGGGCCATTTCAACTTGAAAGTTCACTTATGGGGGtatttttaagaagaaaaaaagcagGTATGATTATCatcgctgtaaaaaaaaaaaggctggggtgctcatttttttcatatgcatttgatgtttttatttgcttaatttctCTGAAATGGCACATTAGAATTTTTGTAATGTCTgttacgagtgtgtgtgtgtgcgtgcgcaatTTGAACATGAAAATGTCCAATCTACATAAGTGCAGCACTAGCATGTTTTGTCGGTGTTTTATGTTACCGTGCTACGTGTTGGGATGTGGTTCCACCAAACAGGTCATTCAGTTATCATAACAAAATAGTTACTCTGAAATGTTTGTTTCATTTGCAAATTCACTGCAGCTGCTCTTCATTGGTCAACCAGCCATATAGCTGTGATTTTATTCACAATTAAGTTTTGACTTCTTTTCTTTAGCTGTACAGCCTGAGGTCATGTGCACTACATTTGCATTATACTTTAGTCAATTTATTTTTGGTTCAGGCTGAAACTGTTCTTTCCTGTTTTCACATTTTCCTATTTTCTTCATGCAGTGTTGCTTGATGAAGGGAAACTCTTGCAAGACTTTGATGCAGTGACTCTAAAGTGGTGCTCAATGACATTCTCCTCCCAACGGtcaaatataatttgcataattattaCTGGGTGCTGATCTAAACAAATCAATCTCATGGATCTGTTGCTTTCTGTTTTGCAGGGGATATATGGGGTGGTTCTCACTGTCGTGGACGTGTTGTATACATTTTATACCACAACAGCATAACATTGACAAATATGGCTTTTCTGATTAGCCGGGAAAGCAATAGTTTGGCTGCTTAACAGGTCACCTTTATGTAAACTCCCCTCttttgcagtgtttctcaaccacgttcctggaggaccaccagcactgcatgttttggatgtctcctttgtctgtcacactcatTCCACATCTTTCAGTGtctactaatgagctgatgatctgaatcaggtgtgtttagttaaggagacatggaaaatgtgcagggctGGTGGTCCCCCAGGAACActggtctaaagcaggggtgcccaaactcactcatggagggccggtgtcctgcatattttagttcaaaccccaattaaacacacttgaaccggctaattaagctctttctaggtatactagaaacttccaggacagtgtgttaaaggaagttggagcttaACTTGGTAGGacgctggccctccaggactgagtttgggcactcctggtcTAAAGAATCAAGTATCAATTACAACCCTGATATGAGTTTGTTGTATTGTACCATTCTGGACGGAGgtcttttggaaaaaaaactatttaagagTGTAAATGTGGCTCACCCAGAGGAATGGGAATTATGTGTTGCTGCAGACGCCTCAGAGGAGTGTATTATTGTGTTCTTGGTCAAACCATTCAGTTCTCAGATGTGCCATTTCTAAATGAGCAGGTGAAATCTGTAGCAACTTTCCTAATTCTTATAGTTTTataataaaagcttttattttgaaatcag

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:1903292 protein localization to Golgi membrane biological_process
GO:0005802 trans-Golgi network cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko05132 Salmonella infection
ko04131 Membrane trafficking
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-030131-5762 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport; protein localization to Golgi membrane; and vesicle-mediated transport. Predicted to be active in trans-Golgi network. Orthologous to human ARL5B (ADP ribosylation factor like GTPase 5B).

Ensembl:

ensembl_id ENSDART00000099121

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068690 lncRNA downstream 4727 41707540 ~ 41709193 (-) True XLOC_034988
TCONS_00068048 lncRNA downstream 86013 41574545 ~ 41627907 (-) True XLOC_034986
TCONS_00068045 lncRNA downstream 215832 41496364 ~ 41498088 (-) True XLOC_034984
TCONS_00068044 lncRNA downstream 217190 41496259 ~ 41496730 (-) False XLOC_034984
TCONS_00068042 lncRNA downstream 218653 41491504 ~ 41495267 (-) False XLOC_034984
TCONS_00068053 lncRNA upstream 37647 41764304 ~ 41765104 (-) False XLOC_034990
TCONS_00068054 lncRNA upstream 38275 41764932 ~ 41777228 (-) False XLOC_034990
TCONS_00068056 lncRNA upstream 78429 41805086 ~ 41812355 (-) True XLOC_034990
TCONS_00068061 lncRNA upstream 149190 41875847 ~ 41881168 (-) True XLOC_034992
TCONS_00068691 lncRNA upstream 251731 41978388 ~ 41980012 (-) True XLOC_034995
TCONS_00068049 mRNA downstream 20916 41632928 ~ 41693004 (-) True XLOC_034987
TCONS_00068046 mRNA downstream 85964 41517173 ~ 41627956 (-) False XLOC_034986
TCONS_00068047 mRNA downstream 159873 41519780 ~ 41554047 (-) False XLOC_034986
TCONS_00068041 mRNA downstream 200921 41491493 ~ 41512999 (-) False XLOC_034984
TCONS_00068039 mRNA downstream 223923 41439136 ~ 41489997 (-) False XLOC_034983
TCONS_00068052 mRNA upstream 30805 41757462 ~ 41812355 (-) False XLOC_034990
TCONS_00068055 mRNA upstream 64865 41791522 ~ 41812015 (-) False XLOC_034990
TCONS_00068057 mRNA upstream 94654 41821311 ~ 41851605 (-) False XLOC_034991
TCONS_00068058 mRNA upstream 94657 41821314 ~ 41858513 (-) True XLOC_034991
TCONS_00068059 mRNA upstream 146423 41873080 ~ 41881238 (-) False XLOC_034992
TCONS_00068043 other downstream 220789 41493017 ~ 41493131 (-) True XLOC_034985
TCONS_00068036 other downstream 297613 41414590 ~ 41416307 (-) True XLOC_034982
TCONS_00068023 other downstream 764730 40948875 ~ 40949190 (-) True XLOC_034975
TCONS_00068010 other downstream 1162866 40538570 ~ 40551054 (-) False XLOC_034968
TCONS_00067999 other downstream 1997847 39715712 ~ 39716073 (-) True XLOC_034962
TCONS_00068069 other upstream 426753 42153410 ~ 42153524 (-) True XLOC_034997
TCONS_00068070 other upstream 564321 42290978 ~ 42291094 (-) True XLOC_034998
TCONS_00068072 other upstream 1085398 42812055 ~ 42812169 (-) True XLOC_035002
TCONS_00068074 other upstream 1605971 43332628 ~ 43332742 (-) False XLOC_035005
TCONS_00068078 other upstream 1836467 43563124 ~ 43563240 (-) True XLOC_035008

Expression Profile

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