RNA id: TCONS_00068057


Basic Information

Item Value
RNA id TCONS_00068057
length 3708
RNA type mRNA
GC content 0.44
exon number 13
gene id XLOC_034991
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41821311 ~ 41858513 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aagagagagagagggaaaatagAAGTGGAGAGATAAGATACCCAATGGAGGTGTTTATTTAAGTGGTGTCATGTCTCTGGCACATACCAACAACAGGGTTTGTTTGAGCGGTCAGCTTTGTGAGAAGCTCACAATACCGAGACTACGAAGGAATTAAAACAGGCTGACAGAGGGATCAGTGGGGCTTCCACctttttttccccacattttGTCATTGCCCTAAGGTTGACCAGGGCAGCCATGAGTAAACAGGCAACTCTGGCAACATGCATTGCCAAGATGTACGAGGGCGGCAGGTTGGAAAACTCTGGGACTCCATCTGGGACGATAAAAAAGCCAAGTCAAACTCTTATAGGAAGCCTGAGCAATGTGGAGGTCAAGTTGATCGCATTGGAGGGGAAGGTGGAGCAGATCGAACGCACCCAGACGGAGGTGCTTCACAAGCTAGGTTCCTTGTGTCAAGGCATGGAAGCTCTGGAAAGGACATTTATGCAGCACAAGCCTAGCACTCAAGAATCAAACACTGTCAAAAATGGCCAGCGGGAGAGCAAGCTCCCTTTGCTGACCGAGGTCAAATCGCTTTGTGGGGAAACAGTGGATCTGCTTCATAATCTAAAGCATGAGAGCCAGCAACAGAGGACGAAGATTGAATGCATGGAAAGTTCTTTGTCCACTCTGGAGAAAGTATTAGGGTATGTGGGAGATGCATTTCGAAACTCAAAGATAGTAGAGTTTATCCTCAATGGTGTGGTGCCATGGAGGAGACAAGGCCTTCTGGACACAGTGGAGGAAAAGAAAAACAAGCCAGATGTCAACAACATTCAACCAAACGTCGGTTTCTGCCACCAGAGCACACAGACTTCACAGCAGGTTAAAGAAGTTATTTCAgCTGAGCTTGAGCTCCAGCAGCCCGAGGTCACTCTTCCTAATGACCCCAGCAGCCAACATTCTCCTGAAGCCCATACAGGGGCAAGTGAACCTCTGAAACCTGTTAGTGCAGGGGAAAGCTCAAAAGCCTTACAAAAGGCCAAAGAGATCTCTGTGAAAAGCAGCGAGCCCACACATGTCCAGACATTTGCTCCTGCAGTCCATCTTGAGCAGATCGACGTGCATAATGTCCCTAAGCAAGAGACGAACAGCTTGGTCGCAGCTCCGGCTGATGCTAAATGTGTCATTGAGACAATGACTAAGGTGGAAAAAGATATAGCGCTTCAGCAAGAGAGAGCTCTTGAACGGGCAGATGATTCACATGTTGCTAATAAGGTTTTTCTCAAATCAATAATTCCGGGACAACAATTGGAGAAGATTGAGGATCCTCAACAACAGGCAGAGGTTTCACTGTTTGTTGATGAGGATTCGTTAGAAAAATCAGTTCCTGGACAACACCTAGATAAGAAGATGGAGGTTCTTCAAAAACAGGCAAAGGATTTACCGGTTGTAGATGAAGACTCATTAAATCTGTCAGCTCCTGGACAAAGACAACTAGAAGAGAAGGTGGATGTTCCTGAAAAAGCTGAGAAGAAGATTGATGAAGCTCATAAAAAGATGGAGGAGGTTCCTCGAAAAGATGAGCTCTGCATAGAAAAGCCTGTTATTAGACATGCAGGAATTAAAACACAACACGAAGAGACAATGGGGATGGAAACAACAGTGCCAAAACATGATGAGAGCAAGTGTCCAACTGAAACATATGTTgagaaaactgaaaataaaaatgcagatgTCACTTTAGAGTCTGATAAAATAATGATCTGTGCTGTTAGTCCACAAAACACAAGCCTTGATGAGGATGAGAAAAGTAAAGCAGCACCTCTAAGAAAAGTTGAGTCGACACTGCTGATCATTGATGACAGCCCACCTCTGCCAGCCCCATTCGACCATCGCATTGTCAGTGCCAAGCAGGTTCCCATTAACTCATATTATGCTGTCAACCCTGTCGAGGTTCTAGGCGGAGGCCGATTTGGACAGGTACACAAGTGCGCAGAGCTATCGTCAGGTCTTACGCTGGCCGCTAAGATAATAAAAGTCCGCGGAATGAAAGAAAGGGATGAAGTGAAGAATGAGATTGGAGTCATGAACCAGCTAAATCACGTGAACTTGATTCAATTATATGATGCTTTTGAGTCTCGAACAAACCTCACACTCATTATGGAATACGTGGAGGGCGGCGAATTGTTTGAACGAATCATTGATGAGAGTTACCAGCTGACGGAGCTGGATGCCATCGTGTTTACCAGGCAGATTTGCGAAGGGGTTCAGTACCTTCACCAGCAGTACATTCTCCATTTAGATCTTAAGCCGGAAAATATCTTATGTGTGAACAGCACAGGCAATCAAATCAAGATCATTGACTTTGGACTCGCCAGAAAGTACAGGCCCAGGGAAAAGCTGAAGGTCAACTTTGGTACCCCAGAGTTTCTGGCACCAGAAGTTGTCAACTATGACTTTGTGTCATTTCCTACAGACATGTGGAGTGTTGGTGTCATCACTTACATGCTTTTGAGTGGCCTTTCTCCATTCATGGGTGACAACGACGCAGAAACAATGAACAACATTCTGCACGCCAAGTGGGAATTTGACACGGAGGCATTCGAGAATGTGTCAGAGGAAGCCAAAGACTTCATATCCAGCCTTCTTGTGTCCGCCAAATGCAGCCGATTGAGTGCATCAGGATGCATGAAGCACAGCTGGCTAAATAACCTGGAGGACAAGGCCAAGATGTACAAAGTTCGGCTGAAGTCTCAAATGATGCTTCAGCGTTACCTTGTTGCACACCGTCAGTGGAAGAAACACTTCTATGCAGTGGCTGCAGCAAACAGGCTGAAGAGGTTTCAGCAAAGCAGATCAATTAGTACACCAAATTAGCTATTAACCTGGAGGACAGTGGACATCACAACATCGCACATTGAACTTGTCTGAATGGTTTTGAAATGGCTTCACAGTACGTGTTCAATATGTTCTTGCCTTTCATCTTGTTAAAAAGGTCGCATTTCCCTTAATGTTTTACCTTGCAACACCATTACATTTCATTTACACGTCTTCATCATGCTTTTTGTAGAGCATGGATGGCAGGGTGTGCTTTTGAACCACATGAAAAAGCTGTTGTCCCTTCTGTGAAGGTGTTTTCCTTGGGCACTTCTGCCTTATACTAGTATCTGAATGTTGCTTTTGTCCTCATGGATTGGTATTTTATATTTAGTCAAAATAGCATGAAGATTTGATGTAGAAACACATTGGTCATCTTATGTTTTCGTTATTTTTAGCATGTTGATTAGAGCCGCAAACAAATTGTTAACTTGATACATTTTCAATTTAAATCTTCATAGTTGAAacctttttatttgttgttcAGAATTTCCTGAATGTTAATCCATACTGTGACTTGAAACTGCTTCCTAGGACTTGACTGCAATAGCGGATATACACATTCATATGGTAAAAGCATGAGAACAAAAACATCCACTACGGTGGTTTTGCTCATGGCTTGGCAACCAGCAATCAAGAGCACAGAATCATAGGGTAGTCCTGTTTTGCTATTTTGTAGAGTGTGCTTGCGTAGACAGCATCTAacaggagtttttttttcagtgtaatactGATTGTCACCAGTTTTCTGGGTAGAAAATGTCTAATTAAGTCAAAAAATGAGAAGTTAAATTGTGTCAAGAACACCCATTTTATTCACATTAAAATCCAAATGGAAGCAAA

Function

GO:

id name namespace
GO:0048769 sarcomerogenesis biological_process
GO:0055005 ventricular cardiac myofibril assembly biological_process
GO:0006468 protein phosphorylation biological_process
GO:0003007 heart morphogenesis biological_process
GO:0016310 phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004687 myosin light chain kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3497 Predicted to enable myosin light chain kinase activity. Involved in ventricular cardiac myofibril assembly. Acts upstream of or within heart morphogenesis and sarcomerogenesis. Predicted to be located in cytoplasm. Is expressed in lens; notochord; pericardial region; and somite. Orthologous to human MYLK3 (myosin light chain kinase 3).

Ensembl:

ensembl_id ENSDART00000142981

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068056 lncRNA downstream 8956 41805086 ~ 41812355 (-) True XLOC_034990
TCONS_00068054 lncRNA downstream 44083 41764932 ~ 41777228 (-) False XLOC_034990
TCONS_00068053 lncRNA downstream 56207 41764304 ~ 41765104 (-) False XLOC_034990
TCONS_00068690 lncRNA downstream 112118 41707540 ~ 41709193 (-) True XLOC_034988
TCONS_00068048 lncRNA downstream 193404 41574545 ~ 41627907 (-) True XLOC_034986
TCONS_00068061 lncRNA upstream 24242 41875847 ~ 41881168 (-) True XLOC_034992
TCONS_00068691 lncRNA upstream 126783 41978388 ~ 41980012 (-) True XLOC_034995
TCONS_00068692 lncRNA upstream 502502 42354107 ~ 42355980 (-) True XLOC_034999
TCONS_00068693 lncRNA upstream 516140 42367745 ~ 42369924 (-) True XLOC_035000
TCONS_00068071 lncRNA upstream 534928 42386533 ~ 42388353 (-) True XLOC_035001
TCONS_00068052 mRNA downstream 8956 41757462 ~ 41812355 (-) False XLOC_034990
TCONS_00068055 mRNA downstream 9296 41791522 ~ 41812015 (-) False XLOC_034990
TCONS_00068051 mRNA downstream 74884 41716085 ~ 41746427 (-) True XLOC_034989
TCONS_00068050 mRNA downstream 94654 41713920 ~ 41726657 (-) False XLOC_034989
TCONS_00068049 mRNA downstream 128307 41632928 ~ 41693004 (-) True XLOC_034987
TCONS_00068059 mRNA upstream 21475 41873080 ~ 41881238 (-) False XLOC_034992
TCONS_00068060 mRNA upstream 21677 41873282 ~ 41881177 (-) False XLOC_034992
TCONS_00068062 mRNA upstream 51935 41903540 ~ 41915312 (-) False XLOC_034993
TCONS_00068063 mRNA upstream 51942 41903547 ~ 41916505 (-) True XLOC_034993
TCONS_00068064 mRNA upstream 96134 41947739 ~ 41964877 (-) False XLOC_034994
TCONS_00068043 other downstream 328180 41493017 ~ 41493131 (-) True XLOC_034985
TCONS_00068036 other downstream 405004 41414590 ~ 41416307 (-) True XLOC_034982
TCONS_00068023 other downstream 872121 40948875 ~ 40949190 (-) True XLOC_034975
TCONS_00068010 other downstream 1270257 40538570 ~ 40551054 (-) False XLOC_034968
TCONS_00067999 other downstream 2105238 39715712 ~ 39716073 (-) True XLOC_034962
TCONS_00068069 other upstream 301805 42153410 ~ 42153524 (-) True XLOC_034997
TCONS_00068070 other upstream 439373 42290978 ~ 42291094 (-) True XLOC_034998
TCONS_00068072 other upstream 960450 42812055 ~ 42812169 (-) True XLOC_035002
TCONS_00068074 other upstream 1481023 43332628 ~ 43332742 (-) False XLOC_035005
TCONS_00068078 other upstream 1711519 43563124 ~ 43563240 (-) True XLOC_035008

Expression Profile

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