RNA id: TCONS_00068692


Basic Information

Item Value
RNA id TCONS_00068692
length 517
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id XLOC_034999
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 42354107 ~ 42355980 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

taggaattaaatgtataattagAAACAGATCTTAGCTTGGAATTATTCACCCCTGTAGAAacattttgcaaaataaaaatgataaatcatTCTCTCCCAGTAGCTGGCGCACACAGATCAGTAATGATGACCAGTGAAGTatctaaattttttattaaatagagtGAAGTAAATTAGACTGAATTAAGcccaattaataaaaatgtaagtttaGATGCTTAATATCTGCAAATAAGCAGAGGTCTGAATAAGCCATactctaaataaataagtaaaaagcaCAAACTTCCACATTACTTTCCTTAATTACTAACTAAGTAACACATTGAGCTACCTTTTTAAGtgtttttggattttattatttttcccccaaCACTGAAAAAGTTCCTCAGACAGGAAGTGGAGAGCAGTACTTTGAGAagccctgctgctgctgctgagtgTCTAGAGCACCTGCATTCCAGATACTGGATCTCTGCTCACCTGCACTCGACTCAACTCTAATGCAGAACCAGGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068691 lncRNA downstream 374095 41978388 ~ 41980012 (-) True XLOC_034995
TCONS_00068061 lncRNA downstream 472939 41875847 ~ 41881168 (-) True XLOC_034992
TCONS_00068056 lncRNA downstream 541752 41805086 ~ 41812355 (-) True XLOC_034990
TCONS_00068054 lncRNA downstream 576879 41764932 ~ 41777228 (-) False XLOC_034990
TCONS_00068053 lncRNA downstream 589003 41764304 ~ 41765104 (-) False XLOC_034990
TCONS_00068693 lncRNA upstream 11765 42367745 ~ 42369924 (-) True XLOC_035000
TCONS_00068071 lncRNA upstream 30553 42386533 ~ 42388353 (-) True XLOC_035001
TCONS_00069278 lncRNA upstream 548387 42904367 ~ 42907198 (-) True XLOC_035003
TCONS_00069279 lncRNA upstream 555730 42911710 ~ 42920024 (-) True XLOC_035004
TCONS_00068073 lncRNA upstream 775238 43131218 ~ 43334179 (-) False XLOC_035005
TCONS_00068068 mRNA downstream 147387 41981366 ~ 42206720 (-) True XLOC_034996
TCONS_00068067 mRNA downstream 385936 41951967 ~ 41968171 (-) True XLOC_034994
TCONS_00068065 mRNA downstream 389212 41951786 ~ 41964895 (-) False XLOC_034994
TCONS_00068066 mRNA downstream 389212 41951967 ~ 41964895 (-) False XLOC_034994
TCONS_00068064 mRNA downstream 389230 41947739 ~ 41964877 (-) False XLOC_034994
TCONS_00068082 mRNA upstream 1404169 43760149 ~ 43840680 (-) False XLOC_035010
TCONS_00068083 mRNA upstream 1404873 43760853 ~ 43787616 (-) False XLOC_035010
TCONS_00068084 mRNA upstream 1405491 43761471 ~ 43840418 (-) False XLOC_035010
TCONS_00068085 mRNA upstream 1405491 43761471 ~ 43857938 (-) False XLOC_035010
TCONS_00068087 mRNA upstream 2243333 44599313 ~ 44604540 (-) False XLOC_035012
TCONS_00068070 other downstream 63013 42290978 ~ 42291094 (-) True XLOC_034998
TCONS_00068069 other downstream 200583 42153410 ~ 42153524 (-) True XLOC_034997
TCONS_00068043 other downstream 860976 41493017 ~ 41493131 (-) True XLOC_034985
TCONS_00068036 other downstream 937800 41414590 ~ 41416307 (-) True XLOC_034982
TCONS_00068023 other downstream 1404917 40948875 ~ 40949190 (-) True XLOC_034975
TCONS_00068072 other upstream 456075 42812055 ~ 42812169 (-) True XLOC_035002
TCONS_00068074 other upstream 976648 43332628 ~ 43332742 (-) False XLOC_035005
TCONS_00068078 other upstream 1207144 43563124 ~ 43563240 (-) True XLOC_035008
TCONS_00068096 other upstream 2312023 44668003 ~ 44668117 (-) True XLOC_035015
TCONS_00068102 other upstream 2550319 44906299 ~ 44906413 (-) True XLOC_035020

Expression Profile

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