RNA id: TCONS_00068066


Basic Information

Item Value
RNA id TCONS_00068066
length 1680
RNA type mRNA
GC content 0.52
exon number 7
gene id XLOC_034994
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41947739 ~ 41968171 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCTGTGTTTTAGTTAATATCAGCCAAACCTATTTCATTCATGTTTCCTTTATCCTCCTGTCTTTTCTCACAGAGACCCAAAATGTGGGTGAATCTCCGTCCAGCACTGAACAGTGCGGCCAGTGGACCCGAAATATCAATGGAGGGCTATTCACATCTCCGAACTATCCAAACTCATATCCACCCAACAAGGAGTGTGTGTACATCCTAGAAGCTCTCCCTCGGCAGAGAATTCAGCTGGCCTTTGACAAAACATACTATATCGAGCCTTCCTTTGAGTGCCGCTTCGACCACATTGAGATAAGGGATGGTCCCTTCGGTTTCTCGCCTCTTATTGATCGCTTCTGCGGGCCGAAGAGTCCAGGTGTGGTCACCTCCACGGGCCGCTTCATGTGGATCAAATTCACCAGTGACGAGGAGCTTGAAGGCTTAGGCTTTCGTGTCAAATACACTTTTATAGCAGACCCAGATTTTCATTTGCACGTCGGTGGATTGCTAAATCCAATTCCAGATTGCCAGTTTGAGATCAGTGGTTCAGACGGAGTCATCCACTCCAGTCAGGTGGAAGAAGAGGATAAGATCAAAAATGGAGACGCGTTGGACTGCATCTGGACCATCCGTGCTCCACCTCAGTCCAAGATATACCTCCGTTTCCTTGAGTACCAGATGGAGCACTCGAACGAGTGCAAGAAGAACTTTGTGGCCGTGTATGACGGCAGCAGCGCCATTGAGAATCTGAAAGCCAAGTTCTGCAGCACAGTGGCCAATGACGTGATGCTGGATACTGGCGTGGGGGTTGTGCGCATGTGGGCTGATGAGAGCAGCAGACTGAGCCGTTTCCGAATGCTCTTCACTTCATTTGTGGATCCTCCATGCTCCAGCAGCACCTTTTTCTGTCACAGCAACATGTGCATCAACAACTCACTGGTCTGCAACGGCGTTCAGAACTGCGTTTACCCCTGGGATGAGAACCACTGTAAGGAGAAAAAATCCAAGGGACTGTTTCACCAGATAACAAAGACACACGGCACAGTTATCGGCATCTCCGCTGGTGTGGTTCTAGTCTTGCTTATCATCTCCATCCTGGTGCAAATGAAGCAACCTCGTAAGAAAGTAGTGGCTCGTCGACCAGCCGTCTTCAACAAAGGCGGGTTCCAAGAGGTATTCGATCCTCCAAACTACGAGCTGTTCTCTCTACGTGACAAGGAGCTGTCGTCAGACCTGGCAGAGCTGTCGGATGAGCTGGATGGGTATCATAAGCTGCGGCGCTCCTCTACCATGTCCCGGTGCATCCACGAGCACCACTGTGGGACCCAGCCCTCCTCGGGTGGCAGCGTAAAGCAGAGCCGCACTACCCTCAGCTCCATGGAGCTTTCCTACCACAACGATTTCTCTAAGCCTCCGCCCATGAAGACCTTCAACAGCAGCAACACCGGCACCTACAAGAAGAGCTGCTATGGCTACAAACAGACTCACGACTGCGCTGAGCAGGTGATCGAGGACCGGGTAATGGAGGAAATGCCCTGTGAAATTTACGTGAGGGGTGGCAGCGTGGCAGGGGCTGCTGGCAGCATCGGAAGCGGCTGCGGGAGCATCACCATCCGTAATCATGGCAATGCTCGTGGTAACAACACCACCGTAGTGGACCCGGGACAGCGTTCCATATCAATGGACTTCTGA

Function

GO:

id name namespace
GO:2000312 regulation of kainate selective glutamate receptor activity biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-638 Predicted to act upstream of or within regulation of kainate selective glutamate receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NETO2 (neuropilin and tolloid like 2).

Ensembl:

ensembl_id ENSDART00000187947

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068061 lncRNA downstream 70799 41875847 ~ 41881168 (-) True XLOC_034992
TCONS_00068056 lncRNA downstream 139612 41805086 ~ 41812355 (-) True XLOC_034990
TCONS_00068054 lncRNA downstream 174739 41764932 ~ 41777228 (-) False XLOC_034990
TCONS_00068053 lncRNA downstream 186863 41764304 ~ 41765104 (-) False XLOC_034990
TCONS_00068690 lncRNA downstream 242774 41707540 ~ 41709193 (-) True XLOC_034988
TCONS_00068691 lncRNA upstream 13493 41978388 ~ 41980012 (-) True XLOC_034995
TCONS_00068692 lncRNA upstream 389212 42354107 ~ 42355980 (-) True XLOC_034999
TCONS_00068693 lncRNA upstream 402850 42367745 ~ 42369924 (-) True XLOC_035000
TCONS_00068071 lncRNA upstream 421638 42386533 ~ 42388353 (-) True XLOC_035001
TCONS_00069278 lncRNA upstream 939472 42904367 ~ 42907198 (-) True XLOC_035003
TCONS_00068063 mRNA downstream 35462 41903547 ~ 41916505 (-) True XLOC_034993
TCONS_00068062 mRNA downstream 36655 41903540 ~ 41915312 (-) False XLOC_034993
TCONS_00068059 mRNA downstream 70729 41873080 ~ 41881238 (-) False XLOC_034992
TCONS_00068060 mRNA downstream 70790 41873282 ~ 41881177 (-) False XLOC_034992
TCONS_00068058 mRNA downstream 93454 41821314 ~ 41858513 (-) True XLOC_034991
TCONS_00068068 mRNA upstream 16471 41981366 ~ 42206720 (-) True XLOC_034996
TCONS_00068082 mRNA upstream 1795254 43760149 ~ 43840680 (-) False XLOC_035010
TCONS_00068083 mRNA upstream 1795958 43760853 ~ 43787616 (-) False XLOC_035010
TCONS_00068084 mRNA upstream 1796576 43761471 ~ 43840418 (-) False XLOC_035010
TCONS_00068085 mRNA upstream 1796576 43761471 ~ 43857938 (-) False XLOC_035010
TCONS_00068043 other downstream 458836 41493017 ~ 41493131 (-) True XLOC_034985
TCONS_00068036 other downstream 535660 41414590 ~ 41416307 (-) True XLOC_034982
TCONS_00068023 other downstream 1002777 40948875 ~ 40949190 (-) True XLOC_034975
TCONS_00068010 other downstream 1400913 40538570 ~ 40551054 (-) False XLOC_034968
TCONS_00067999 other downstream 2235894 39715712 ~ 39716073 (-) True XLOC_034962
TCONS_00068069 other upstream 188515 42153410 ~ 42153524 (-) True XLOC_034997
TCONS_00068070 other upstream 326083 42290978 ~ 42291094 (-) True XLOC_034998
TCONS_00068072 other upstream 847160 42812055 ~ 42812169 (-) True XLOC_035002
TCONS_00068074 other upstream 1367733 43332628 ~ 43332742 (-) False XLOC_035005
TCONS_00068078 other upstream 1598229 43563124 ~ 43563240 (-) True XLOC_035008

Expression Profile

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