RNA id: TCONS_00068084


Basic Information

Item Value
RNA id TCONS_00068084
length 2653
RNA type mRNA
GC content 0.52
exon number 12
gene id XLOC_035010
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 43760149 ~ 43857938 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caGACAGCTCATTTGCAGTGGATGCACACCTATTGGGAGaatcagagagggagaaagagaagaaaagaaTGACTTTGTGATGAATCTAAACGTGGGAAATCAAATCCAGTGAGGTCTCATCTTGTCCCCATTGACCTCTTTAGAGACCGAACCATTCAGAGGACGCCCTTTGAAGGATTCCTCCTGGACCTTGATACTCACCGGAGGGGTGTGAACAGGAAGGTCCAGAGGAAGTGGACAGTTTGGCAGGATGTGGGAGGGACTGAGATTGCAGGTGTTCTTCTTGTGTTTGGGGGCTGCACTATGGAGTGCTGCAGCGGCAGCAACACACAGGGGCTCAGGTCCACGGGAGCGTGGCCACCGGCGACATCTTTCTTTgcacagacacagagagagaggcaAAGAGGGCCAGGTGCTTCACCGCTCCAAAAGAGGATGGGTCTGGAACCAGTTCTTTGTCATTGAGGAGTACACAGGCCCAGATCCCGTCTTAGTAGGTCGACTTCATTCGGATGTGGATTCAGGAGATGGAAACATTAAATACATCCTTTCAGGGGAAGGAGCAGGTACTATATTTGTCATCGATGACAAAACAGGCAACATTCATGCCACAAAGACTCTGGACAGAGAAGAGCAGGCACAGTACACGCTGACCGCCCAGGCTGTGGCTCGAGACACCAACAAACCCCTAGAGCCTCCCTCAGAGTTCATTGTCAAGGTGCAGGACATCAACGACAATCCTCCAGAGTTCCTTCACGGCCCTTACTATGCGCGAGTGGCTGAGATGTCCAATGTTGGTACTTCAGTGATAAAGGTCACAGCTACAGACGCAGATGACCCCACATATGGTAACAGCGCCAGACTGGTCTACAGCATCCTGCAGGGCCAGCCTTATTTTTCTGTGGAGCCGCAAACAGGAATAATTCGGACAGCTCTTCCCAACATGGACAGGGAGGCCAGGCAGGAATACGATGTCGTCATCCAGGCCAAGGACATGGGTGGACACATGGGCGGGCTGTCAGGAACAACTCAGGTTAAAATAACCCTGACTGATGTCAATGACAACCCTCCAAAGTTCGCTCAGGGTGTTTACGCCATGGCGGTCTCTGAGGACAAGGTTCCCGGTGAGGAGGTGGGCAGACTGAAGGCTAGAGATCCCGATCTGGCGGAGAACGGACTGGTGGATTATCGCATCTTAGAGGGAGACGGCATGAACTACTTTGAAATCACCAAGGACTCAGAGACCCAGGAGGCAGTCATCAAACTAAAGAAGCCTGTGGACTTTGAGACTAAGCGATCGTACACACTCAAAGTAGAAGCCACCAACACACACGTGGACCCACGTTTCATCGCCTGGGGTCCGTACAAAGATACAACCATTGTGAAAATATCAGTAGAAGATGCAGATGAGCCCCCGACCTTTATGGCTCCCAGCTACAACTTCGAGGTGGAGGAAAACGCCCCAGCAGGCACACTGGTCGGCCGTGTGCATGCCAAAGACACCGACATGATGAACAACCCCATCAGATATATGATCCCACACTACACAGACTTGGAAGAGTTTTTCACCATTAATCCTGAGGACGGCATAATTAAGACCACAAGGCCTTTAGATCGGGAAGCACAGGCTTGGCACAACATTTCTGTCAGCGCTACAGAGATTGGTGGCCATCATCAAGATGCAAAAGTACGAGTCAATATCAAAGTCAAAGATGTGAATGATAACGCTCCAGAATTTGCCACTCAAAATGAAGTGCTGGTCTGTGAGAATGTCAACCCTGGAAAGCTCATTGAGACGGTTAGCGCCACGGATAAGGACGAAATGGCCCACCGCCAGCACTTCCACTTCAGCCTGGCCCCCGAGGTCGCCAACAACCACAGTTTCTCCCTCAAGGACAACAGAGACAGCACTGCTAGCATCTTTGTGATCCGGAAGGGCTTCAGCAGAATGACCCAGGATATCTACCACCTTCCCATTGAGATCAATGACAACGGCGTACCCCCGATGAGCAGCACCAATACCCTCATAATCCGCGTGTGTAGCTGCGACAGTAAAGACACCATCCTCTCCTGCAACGTGGAGCCTTTCATCTTGACGGCTGGGCTTAGCACCGGAGCTCTGATTGCCATCTTGGCTTGCATTGTTATTCTACTGGCGATCGTGGTGCTGTTCGTGGCCCTGCGGCGGCAGAAGAAGGAGCCTTTGATTGTATTTGAGGAGGAAGACATTCGGGAGAACATCATCACGTATGATGACGAAGGAGGCGGAGAGGAGGACACTGAGGCGTTTGACATCGCCACCTTACAGAATCCAGACGGTGCCAATGGCTTTCTGCCTCGTAAGGACATGAAGCCCGAGCTGCAGTACGGAATGCGGCCCGGCCTGAGGCCCATCGGCAATAGTGTGGATGTAGATGATTTCATCAAAACACGCATTTCCGATGCGGACAATGACCCCACAGCGCCCCCTTATGACTCCATTCAGATCTACGGTTACGAAGGTAGAGGCTCCATCGCCGGATCTCTCAGTTCCTTGGAGTCAGTGACCACAGATTCAGACCTGGACTATGATTACCTCCAAAGTTGGGGGCCACGCTTCAAGAAACTAGCCGATCTTTACGGCACCAAAGACTCCGTCGATGACAACTCTTAA

Function

GO:

id name namespace
GO:0000902 cell morphogenesis biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0007275 multicellular organism development biological_process
GO:0048840 otolith development biological_process
GO:0007043 cell-cell junction assembly biological_process
GO:0034332 adherens junction organization biological_process
GO:0098742 cell-cell adhesion via plasma-membrane adhesion molecules biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005912 adherens junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016342 catenin complex cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0045296 cadherin binding molecular_function

KEGG:

id description
ko04515 Cell adhesion molecules

ZFIN:

id description
ZDB-GENE-980526-170 Predicted to enable cadherin binding activity and calcium ion binding activity. Acts upstream of or within otolith development; retina development in camera-type eye; and retinal ganglion cell axon guidance. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of catenin complex. Predicted to be active in adherens junction. Is expressed in cleithrum; nervous system; optic vesicle; and pectoral fin bud. Human ortholog(s) of this gene implicated in Elsahy-Waters syndrome. Orthologous to human CDH11 (cadherin 11).

Ensembl:

ensembl_id ENSDART00000174592

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068080 lncRNA downstream 46032 43603962 ~ 43715439 (-) False XLOC_035009
TCONS_00068081 lncRNA downstream 46051 43638763 ~ 43715420 (-) False XLOC_035009
TCONS_00068079 lncRNA downstream 46052 43603957 ~ 43715419 (-) False XLOC_035009
TCONS_00069283 lncRNA downstream 119229 43638765 ~ 43642242 (-) True XLOC_035009
TCONS_00068077 lncRNA downstream 285940 43468336 ~ 43475531 (-) True XLOC_035007
TCONS_00068086 lncRNA upstream 161594 44002012 ~ 44008728 (-) True XLOC_035011
TCONS_00068088 lncRNA upstream 759366 44599784 ~ 44600628 (-) False XLOC_035012
TCONS_00068699 lncRNA upstream 771031 44611449 ~ 44613921 (-) False XLOC_035013
TCONS_00068092 lncRNA upstream 771205 44611623 ~ 44613921 (-) False XLOC_035013
TCONS_00068093 lncRNA upstream 771549 44611967 ~ 44612921 (-) False XLOC_035013
TCONS_00068068 mRNA downstream 1554751 41981366 ~ 42206720 (-) True XLOC_034996
TCONS_00068067 mRNA downstream 1793300 41951967 ~ 41968171 (-) True XLOC_034994
TCONS_00068065 mRNA downstream 1796576 41951786 ~ 41964895 (-) False XLOC_034994
TCONS_00068066 mRNA downstream 1796576 41951967 ~ 41964895 (-) False XLOC_034994
TCONS_00068064 mRNA downstream 1796594 41947739 ~ 41964877 (-) False XLOC_034994
TCONS_00068087 mRNA upstream 758895 44599313 ~ 44604540 (-) False XLOC_035012
TCONS_00068089 mRNA upstream 759509 44599927 ~ 44605050 (-) False XLOC_035012
TCONS_00068090 mRNA upstream 761497 44601915 ~ 44604821 (-) False XLOC_035012
TCONS_00068091 mRNA upstream 762321 44602739 ~ 44605056 (-) True XLOC_035012
TCONS_00068095 mRNA upstream 788263 44628681 ~ 44672095 (-) True XLOC_035014
TCONS_00068078 other downstream 198231 43563124 ~ 43563240 (-) True XLOC_035008
TCONS_00068074 other downstream 428729 43332628 ~ 43332742 (-) False XLOC_035005
TCONS_00068072 other downstream 949302 42812055 ~ 42812169 (-) True XLOC_035002
TCONS_00068070 other downstream 1470377 42290978 ~ 42291094 (-) True XLOC_034998
TCONS_00068069 other downstream 1607947 42153410 ~ 42153524 (-) True XLOC_034997
TCONS_00068096 other upstream 827585 44668003 ~ 44668117 (-) True XLOC_035015
TCONS_00068102 other upstream 1065881 44906299 ~ 44906413 (-) True XLOC_035020
TCONS_00068110 other upstream 1900074 45740492 ~ 45740608 (-) True XLOC_035026
TCONS_00068120 other upstream 2385826 46226244 ~ 46226360 (-) True XLOC_035035
TCONS_00068134 other upstream 4120759 47961177 ~ 47961293 (-) True XLOC_035046

Expression Profile

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