XLOC_035014 (cmtm4)


Basic Information

Item Value
gene id XLOC_035014
gene name cmtm4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 44628681 ~ 44672095 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068095
CTGCAGAACTCAGAGAGGAGAACTCGAAGCTGAAGAGGAATGCCAGTTTTGTGCTTTTGTTTCTCTGACATCAGTCGTCGGGACTCCAGATGAAAGCGTCTTTTCCTCGCAGGAATGTAGTTTGGAGGGCGGAGACTCGCAGCAACATTACATTCTGCATCCAGAAACTGTGAAATATGGACACTGCCATGAGAACAGCGGCGATCGTTCGAGCTCGTTCAGCTCTGTTCATGACTGGATCCGAGCACTGTACGGCGCCAGGAACGGGACCGGAGATCACGGAGTGGTGGATGTAGTTGTTCGGGATCCGCGGGTCACGCTATTAACACACGGCTGGAGTTTACGCGTTGTGTAGCGACGCTTGTTCTTTGTTGAGAGATTGTTGTTGCGTTCTGCCTGACTGTTTTCAGAGGAGAGAATCGCTCTTAATTTCGGCCACTCTTGTTTCTTGGGCGGGACGAAGAGATAAATAAAAGAGTTGAGCATGAGGAATAACGAGGAGACTGAGGGCTTTGATGGCGAGGCCTCCAACACCTCGATGATTTCAGGAGTCAATAGTCCGTATCAGCCGACCACCGAGCCCGTGCTCTCCAGAAACGTGTTCAGGGCCATCAGGTGTGACCGGGAGTACCTCAAGTCACATTTTGGAATTTTAAAAGTCATTGAAGTGGTTCTGGCTCTCATCTCGTTCATCTTCATTGAGACCATAATGATGTGCTCGCCGTGTGCCGGCGTCTACCTCTTTGAGTTTGTCAGCTGCAGTGCCTTCGTTGTCACCGGCGTCTTGCTCCTCATCTTCAGTCTGAACCTGCACACTAAAGTGCCTCACATCAACTGGAGTCTAACAGATTTAATCAACACTGCCACCAGCACCTTTTTCTTCTTTCTGGCTTCAGTGGTTTTGGCAGCTCTCAACCATCAGTCAGGAGCAGAGATTGCAGCTGTGATTTTCGGGTTCCTGGTGATGGCAGTGTATGCCCTGAACACGTTTTTGGCATTACGGCGATGGCGCCTTGGGGACACTCGGGATGGACCCATGCAGACCAGCGAGTACATCCGGGCCAGGACAGCATCTCGTGGAGAGGTGGAGTCTCGGCCTGAGCTACAGTAAAGATCACATGTTGCAGTGTGTGCTTTCATGTCTTAGTGATGGAGTCTGATGACTGGCTATTCAGGATGAACAAACCTCTGGCATCTTCAGCAGCCTCAGGCCATCCTCAGTTAAATACTGTATCTTTCCGCTAATTAAGGGCTTTACCTTACCATGATCTGGATAATTATTGACTGAAACTGTGCTCCCGAACTGCTCCCAAATGGCTAATAATGGCTGCAATAAAACGGAGGAAGCTGAGAGTCACCGATTGAAGGCTTTTAAGCTTAGCTCCATCTCCCGGCTGCCTGtatgaagcagcacaactgtGTGGACGTTGTGTCAGATCAAAAAACAATCCTGATTTGTAGGCTGATTTCAGGGGTGTTCACACTTgcagtttgttttgcttttttgtttgtatagTCCTGATCAAAAAAAGATTGGGTTTGGAGTCTTGGTTTGTTTAGCAGTCACAGGGTCAATTTTAAAATCCGAAtccaaagctaaaaaaaaaaaa

Function

symbol description
cmtm4 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CMTM4 (CKLF like MARVEL transmembrane domain containing 4).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-195 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CMTM4 (CKLF like MARVEL transmembrane domain containing 4).

Ensembl:

ensembl_id ENSDARG00000052020

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068095 True 1610 mRNA 0.48 4 44628681 44672095

Neighbor

gene id symbol gene type direction distance location
XLOC_035013 NA coding downstream 14760 44611449 ~ 44613921 (-)
XLOC_035012 tk2 coding downstream 23625 44599313 ~ 44605056 (-)
XLOC_035011 BX842687.1 coding downstream 619953 44002012 ~ 44008728 (-)
XLOC_035010 cdh11 coding downstream 770743 43760149 ~ 43857938 (-)
XLOC_035009 BX005396.2 coding downstream 913242 43603957 ~ 43715439 (-)
XLOC_035016 dync1li2 coding upstream 2861 44674956 ~ 44704910 (-)
XLOC_035017 NA coding upstream 58234 44730329 ~ 44735073 (-)
XLOC_035018 nae1 coding upstream 101817 44773912 ~ 44794322 (-)
XLOC_035019 cdh16 coding upstream 185176 44857271 ~ 44957503 (-)
XLOC_035020 BX511136.2 coding upstream 234204 44906299 ~ 44906413 (-)
XLOC_035008 BX005396.5 non-coding downstream 1065441 43563124 ~ 43563240 (-)
XLOC_035007 BX005396.3 non-coding downstream 1153150 43468336 ~ 43475531 (-)
XLOC_035024 NA non-coding upstream 742469 45414564 ~ 45415894 (-)
XLOC_035025 NA non-coding upstream 979004 45651099 ~ 45814324 (-)
XLOC_035026 BX511025.2 non-coding upstream 1068397 45740492 ~ 45740608 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_14697383_14715245 CMTM4 coding CI01000026 null 14697043 ~ 14715245 (-)