XLOC_035013


Basic Information

Item Value
gene id XLOC_035013
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 44611449 ~ 44613921 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068699
ATTACCGAGCCCCATTCAAGCACTGCAGCAGAGAGCGTTGTCATGGAAACGGAGCAACTACACGACACCTGACCGTCAACAGCACTTCTCTCATGCGGCAGTTTTCACtaatttcagtggtctgtggtttcaggagtgaCAAAATTACCCCTACAACAGAAGAAAAGAGCCAAGATGAAGGGAGCTAATCACAGAGCTGGAGGAAACACAGATTTTGGATCGTCCTCTACTCACTCTACCACTTTGTTTTTCCTTGCCAGATTTCATTCAAGGATAAGAAAGAAGCCTGCTACAAGAGAGACAGCGGAAGGGAGCCTCAAAGACATTTTTATTAGGATCTGCTAATCATGAGGGGGCAGACAAAAGAACctgcattttccttcagcttaatatcaggggtcgccacagcgtaaggAACTGGATAttactttggcatatgttttacacagccttccagctgcaacccagcactgtgaaacacccatacactctcgtatTCACAGACACTTCTACACTATgttcaaattcacctatagcacaagtgtttggactgtggtggaaacccacaccaaaacagggagaacatgcaaactccacacagaaatgccagcagacccagccgggactcataccagcaacctttttgctgtgaggtgacagtctgagccactgtgctgccccagtGTAGTTATTAATAACCTCCAGATGTTTTACAGTttgattttgtaataataatgcaCGTTTAGATTTattgtaatatgttaatatttattcgcaatgtaatttattcttatgttatttataataacGTTAAATGTCATAAGaatgttataatttaatataatattataataaataattataataatgttaaaatataaacaatacaattttttttaatagtttatttttataatgagaaGTCTCAAAGTTTGTCTTTATTATAGAAAACTCATTGTTGAATGGCtaccactttacaataaggttgtatgtattcgttaatgtatttactaacataataaacaatacatttattacagtatttatttatctttgctaatGTTGGTAAATG
>TCONS_00068092
ATTACCGAGCCCCATTCAAGCACTGCAGCAGAGAGCGTTGTCATGGAAACGGAGCAACTACACGACACCTGACCGTCAACAGCACTTCTCTCATGCGGCAGTTTTCACtaatttcaggagtgaCAAAATTACCCCTACAACAGAAGAAAAGAGCCAAGATGAAGGGAGCTAATCACAGAGCTGGAGGAAACACAGATTTTGGATCGTCCTCTACTCACTCTACCACTTTGTTTTTCCTTGCCAGATTTCATTCAAGGATAAGAAAGAAGCCTGCTACAAGAGAGACAGCGGAAGGGAGCCTCAAAGACATTTTTATTAGGATCTGCTAATCATGAGGGGGCAGACAAAAGAACctgcattttccttcagcttaatatcaggggtcgccacagcgtaaggAACTGGATAttactttggcatatgttttacacagccttccagctgcaacccagcactgtgaaacacccatacactctcgtatTCACAGACACTTCTACACTATgttcaaattcacctatagcacaagtgtttggactgtggtggaaacccacaccaaaacagggagaacatgcaaactccacacagaaatgccagcagacccagccgggactcataccagcaacctttttgctgtgaggtgacagtctgagccactgtgctgccccagtGTAGTTATTAATAACCTCCAGATGTTTTACAGTttgattttgtaataataatgcaCGTTTAGATTTattgtaatatgttaatatttattcgcaatgtaatttattcttatgttatttataataacGTTAAATGTCATAAGaatgttataatttaatataatattataataaataattataataatgttaaaatataaacaatacaatttttttt
>TCONS_00068093
AGATTTTGGATCGTCCTCTACTCACTCTACCACTTTGTTTTTCCTTGCCAGATTTCATTCAAGAAAGAAGCCTGCTACAAGAGAGACAGCGGAAGGGAGCCTCAAAGACATTTTTATTAGGATCTGCTAATCATGAGGGGGCAGACAAAAGAACctgcattttccttcagcttaatatcaggggtcgccacagcgtaaggAACTGGATAttactttggcatatgttttacacagccttccagctgcaacccagcactgtgaaacacccatacactctcgtatTCACAGACACTTCTACACTATgttcaaattcacctatagcacaagtgtttggactgt
>TCONS_00068094
GCAGAGAGCGTTGTCATGGAAACGGAGCAACTACACGACACCTGACCGTCAACAGCACTTCTCTCATGCGGCAGTTTTCACtaatttcaggagtgaCAAAATTACCCCTACAACAGAAGAAAAGAGCCAAGATGAAGGGAGCTAATCACAGAGCTGGAGGAAACACAGATTTTGGATCGTCCTCTACTCACTCTACCACTTTGTTTTTCCTTGCCAGATTTCATTCAAGAAGCCTGCTACAAGAGAGACAGCGGAAGGGAGCCTCAAAGACATTTTTATTAGGATCTGCTAATCATGAGGGGGCAGACAAAAGAACctgcattttccttcagcttaatatcaggggtcgccacagcgtaaggAACTGGATAttactttggcatatgttttacacagc

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006457 protein folding biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0043248 proteasome assembly biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005829 cytosol cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005840 ribosome cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0019843 rRNA binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000099557

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068699 False 1072 lncRNA 0.37 4 44611449 44613921
TCONS_00068092 False 882 lncRNA 0.39 4 44611623 44613921
TCONS_00068093 False 339 lncRNA 0.43 2 44611967 44612921
TCONS_00068094 True 397 lncRNA 0.45 4 44612071 44613894

Neighbor

gene id symbol gene type direction distance location
XLOC_035012 tk2 coding downstream 6393 44599313 ~ 44605056 (-)
XLOC_035011 BX842687.1 coding downstream 602721 44002012 ~ 44008728 (-)
XLOC_035010 cdh11 coding downstream 753511 43760149 ~ 43857938 (-)
XLOC_035009 BX005396.2 coding downstream 896010 43603957 ~ 43715439 (-)
XLOC_035008 BX005396.5 coding downstream 1048209 43563124 ~ 43563240 (-)
XLOC_035014 cmtm4 coding upstream 14760 44628681 ~ 44672095 (-)
XLOC_035015 BX511128.4 coding upstream 54082 44668003 ~ 44668117 (-)
XLOC_035016 dync1li2 coding upstream 61035 44674956 ~ 44704910 (-)
XLOC_035017 NA coding upstream 116408 44730329 ~ 44735073 (-)
XLOC_035018 nae1 coding upstream 159991 44773912 ~ 44794322 (-)
XLOC_035007 BX005396.3 non-coding downstream 1135918 43468336 ~ 43475531 (-)
XLOC_035006 NA non-coding downstream 1355377 43254190 ~ 43256072 (-)
XLOC_035020 BX511136.2 non-coding upstream 292378 44906299 ~ 44906413 (-)
XLOC_035024 NA non-coding upstream 800643 45414564 ~ 45415894 (-)
XLOC_035025 NA non-coding upstream 1037178 45651099 ~ 45814324 (-)
XLOC_035005 BX005003.1 non-coding downstream 1187530 43131218 ~ 43423919 (-)

Expression


Co-expression Network