RNA id: TCONS_00068094


Basic Information

Item Value
RNA id TCONS_00068094
length 397
lncRNA type antisense
GC content 0.45
exon number 4
gene id XLOC_035013
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 44611449 ~ 44613921 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGAGAGCGTTGTCATGGAAACGGAGCAACTACACGACACCTGACCGTCAACAGCACTTCTCTCATGCGGCAGTTTTCACtaatttcaggagtgaCAAAATTACCCCTACAACAGAAGAAAAGAGCCAAGATGAAGGGAGCTAATCACAGAGCTGGAGGAAACACAGATTTTGGATCGTCCTCTACTCACTCTACCACTTTGTTTTTCCTTGCCAGATTTCATTCAAGAAGCCTGCTACAAGAGAGACAGCGGAAGGGAGCCTCAAAGACATTTTTATTAGGATCTGCTAATCATGAGGGGGCAGACAAAAGAACctgcattttccttcagcttaatatcaggggtcgccacagcgtaaggAACTGGATAttactttggcatatgttttacacagc

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006457 protein folding biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0043248 proteasome assembly biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005829 cytosol cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005840 ribosome cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0019843 rRNA binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000143565

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068088 lncRNA downstream 11443 44599784 ~ 44600628 (-) False XLOC_035012
TCONS_00068086 lncRNA downstream 603343 44002012 ~ 44008728 (-) True XLOC_035011
TCONS_00069284 lncRNA downstream 825900 43761810 ~ 43786171 (-) True XLOC_035010
TCONS_00068081 lncRNA downstream 896651 43638763 ~ 43715420 (-) False XLOC_035009
TCONS_00069285 lncRNA upstream 116435 44730329 ~ 44735073 (-) True XLOC_035017
TCONS_00068700 lncRNA upstream 800670 45414564 ~ 45415894 (-) True XLOC_035024
TCONS_00069286 lncRNA upstream 1037205 45651099 ~ 45664239 (-) False XLOC_035025
TCONS_00068109 lncRNA upstream 1037585 45651479 ~ 45814247 (-) False XLOC_035025
TCONS_00069287 lncRNA upstream 1199408 45813302 ~ 45814275 (-) False XLOC_035025
TCONS_00068091 mRNA downstream 7015 44602739 ~ 44605056 (-) True XLOC_035012
TCONS_00068089 mRNA downstream 7021 44599927 ~ 44605050 (-) False XLOC_035012
TCONS_00068090 mRNA downstream 7250 44601915 ~ 44604821 (-) False XLOC_035012
TCONS_00068087 mRNA downstream 7531 44599313 ~ 44604540 (-) False XLOC_035012
TCONS_00068085 mRNA downstream 754133 43761471 ~ 43857938 (-) False XLOC_035010
TCONS_00068095 mRNA upstream 14787 44628681 ~ 44672095 (-) True XLOC_035014
TCONS_00068097 mRNA upstream 61062 44674956 ~ 44704910 (-) True XLOC_035016
TCONS_00068098 mRNA upstream 160018 44773912 ~ 44794322 (-) True XLOC_035018
TCONS_00068100 mRNA upstream 243377 44857271 ~ 44909540 (-) False XLOC_035019
TCONS_00068099 mRNA upstream 243377 44857271 ~ 44909540 (-) False XLOC_035019
TCONS_00068078 other downstream 1048831 43563124 ~ 43563240 (-) True XLOC_035008
TCONS_00068074 other downstream 1279329 43332628 ~ 43332742 (-) False XLOC_035005
TCONS_00068072 other downstream 1799902 42812055 ~ 42812169 (-) True XLOC_035002
TCONS_00068070 other downstream 2320977 42290978 ~ 42291094 (-) True XLOC_034998
TCONS_00068069 other downstream 2458547 42153410 ~ 42153524 (-) True XLOC_034997
TCONS_00068096 other upstream 54109 44668003 ~ 44668117 (-) True XLOC_035015
TCONS_00068102 other upstream 292405 44906299 ~ 44906413 (-) True XLOC_035020
TCONS_00068110 other upstream 1126598 45740492 ~ 45740608 (-) True XLOC_035026
TCONS_00068120 other upstream 1612350 46226244 ~ 46226360 (-) True XLOC_035035
TCONS_00068134 other upstream 3347283 47961177 ~ 47961293 (-) True XLOC_035046

Expression Profile

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