RNA id: TCONS_00068098


Basic Information

Item Value
RNA id TCONS_00068098
length 1829
RNA type mRNA
GC content 0.46
exon number 20
gene id XLOC_035018
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 44773912 ~ 44794322 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCGATCGGAAAATAGTGAAACAGTGGCGCGCCGGTAGGATTCAGCcgtcacagagagagagacagaggacCATGACAGACCCCAAAACAAGCAAAGAGCAGAAGTATGATCGACAGCTCAGGTTGTGGGGAGATCATGGACAGGAAGCACTTGAAAATGCCCATGTGTGTCTCATCAATGCCACTGCATCTGGCACTGAAATCCTCAAGAACCTTGTGCTGCCCGGAATCGGAGCCTTTACCATTGTAGACGGGCACAAAGTTTCAGGGGAGGATGTTGGAAACAACTTTTTTCTCAGCAGCAGTGCTATTGGAAAGAACAGGGCACAGGCGGCTACGGAATTGCTCCAGGAGCTCAACAGTGATGTTTCTGGAAACTTTGTGGAAGAGAGTCCTGATAAGCTATTGGACAACGACTGTGAGTTTTTTCACAGGTTTAGTCTGGTAATTGCCGTCCAGCTTCCAGAAAGcaCATGTTTGAGGCTCGGTGCAGTGTTATGGGAGGCTGGAGTGCCATTTCTTGTATGTCGAACATATGGACTTATTGGCTACATGAGGCTGATTGTAAAGGAGCACACAGTGGTGGAGTCTCATCCAGATAATGTTTTGGAGGATCTGAGACTAGACCAGCCATTCACAGAGCTCAAACGCCATGTAGAGTCTTACGACTTGGACAACATGGAGAAGAAGGATCACAGTCACACACCGTGGATCATTGTGGTTGCCAGATATTTGGAAAAGTGGTACAATGAGAACAACTCCCAGTTGCCCAAGAATTATAAGGAGAAAGAAGCATTCAGGCAACTCCTCAGAGAAGGGATCCTTAAGAATGAGAATGGAGGACTTGAAGATGAAGAGAACTTTGAGGAGGCGATCAAGAACGTGAACACTGCTCTAAACCCCACTAAGATCTCCAGTGGAACGCAGGACATTTTTAATGCtgagcagtgtgaaaacattacCTCACAGAGCTCGTCCTTTTGGGTGATGGCACATGGAGTTCGGGACTTTGTTCAAAATGAGGGGAACGGAAACCTCCCGGTTCGAGGAAGCATCCCAGACATGATTGCAGATTCAGACAAATTCATCAAGTTACAAAATGTGTACAGAGACAAAGCCATGAGGGATGCAGCAGTTGTGTCCAAACATGTTGAAATGCTTCTACAATCAGTTGGAAAGACTCCAGAAAGCATCTCTGAACAGGAAATCAAACTCTTTTGTAAGAACGCGGCTTTCCTCCGAGTGGTGCGCTGCAGGTCTCTGGCTGACGAGTACAGTGTGGACACTTTTAATAAAGATGAAATCACATCCTGTATGGACAGTCCAGACAGTGAGATGGTTCTGTACCTTATGCTCCGCTCAGTCGACCGCTTCTATCAGCAACACTCCCGCTACCCAGgtGTCTACAATTATCAGGTGGAGGAAGACATTAACAAGCTGAAGCTGTGTGTAAACAGTCTCCTGCAGGAGTACAGTCTTAACGTCAATGTAAAAGATGACTACATCCATGAGTTCTGCCGATATGGAGCTGCTGAGCCACACACAGTCGCAGCTTTTCTGGGAGGATCAGCGGCTCAAGAGGCCATTAAAATCATCACGCACCAGTTTGTACCTTTCAACAACACGTTCCTCTATAACGCCATGTCACAGACCTCTGCGACTTTTCAGCTGTAAAACAGTCATCTCCATCTGTTTCTCCATTCCTCTGTCGAAGTGCTGGCCTCAAATTGGCACTCAAGTTTATTTATGCTTGCATTGGtcgatggtgttgctttttagaCAAGTCTCAACACTGATGCTAAATACTGAATAAACAGTGTATCTCCAaa

Function

GO:

id name namespace
GO:0045116 protein neddylation biological_process
GO:0032446 protein modification by small protein conjugation biological_process
GO:0005737 cytoplasm cellular_component
GO:0019781 NEDD8 activating enzyme activity molecular_function
GO:0008641 ubiquitin-like modifier activating enzyme activity molecular_function

KEGG:

id description
ko05010 Alzheimer disease
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040426-1552 Predicted to enable NEDD8 activating enzyme activity. Predicted to be involved in protein neddylation. Predicted to be active in cytoplasm. Orthologous to human NAE1 (NEDD8 activating enzyme E1 subunit 1).

Ensembl:

ensembl_id ENSDART00000019270

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069285 lncRNA downstream 38839 44730329 ~ 44735073 (-) True XLOC_035017
TCONS_00068699 lncRNA downstream 159991 44611449 ~ 44613921 (-) False XLOC_035013
TCONS_00068092 lncRNA downstream 159991 44611623 ~ 44613921 (-) False XLOC_035013
TCONS_00068094 lncRNA downstream 160018 44612071 ~ 44613894 (-) True XLOC_035013
TCONS_00068093 lncRNA downstream 160991 44611967 ~ 44612921 (-) False XLOC_035013
TCONS_00068700 lncRNA upstream 620242 45414564 ~ 45415894 (-) True XLOC_035024
TCONS_00069286 lncRNA upstream 856777 45651099 ~ 45664239 (-) False XLOC_035025
TCONS_00068109 lncRNA upstream 857157 45651479 ~ 45814247 (-) False XLOC_035025
TCONS_00069287 lncRNA upstream 1018980 45813302 ~ 45814275 (-) False XLOC_035025
TCONS_00069288 lncRNA upstream 1018980 45813302 ~ 45814324 (-) True XLOC_035025
TCONS_00068097 mRNA downstream 69002 44674956 ~ 44704910 (-) True XLOC_035016
TCONS_00068095 mRNA downstream 101817 44628681 ~ 44672095 (-) True XLOC_035014
TCONS_00068091 mRNA downstream 168856 44602739 ~ 44605056 (-) True XLOC_035012
TCONS_00068089 mRNA downstream 168862 44599927 ~ 44605050 (-) False XLOC_035012
TCONS_00068090 mRNA downstream 169091 44601915 ~ 44604821 (-) False XLOC_035012
TCONS_00068100 mRNA upstream 62949 44857271 ~ 44909540 (-) False XLOC_035019
TCONS_00068099 mRNA upstream 62949 44857271 ~ 44909540 (-) False XLOC_035019
TCONS_00068101 mRNA upstream 63088 44857410 ~ 44957503 (-) True XLOC_035019
TCONS_00068103 mRNA upstream 165866 44960188 ~ 44963154 (-) True XLOC_035021
TCONS_00068104 mRNA upstream 171451 44965773 ~ 44970994 (-) False XLOC_035022
TCONS_00068096 other downstream 105795 44668003 ~ 44668117 (-) True XLOC_035015
TCONS_00068078 other downstream 1210672 43563124 ~ 43563240 (-) True XLOC_035008
TCONS_00068074 other downstream 1441170 43332628 ~ 43332742 (-) False XLOC_035005
TCONS_00068072 other downstream 1961743 42812055 ~ 42812169 (-) True XLOC_035002
TCONS_00068070 other downstream 2482818 42290978 ~ 42291094 (-) True XLOC_034998
TCONS_00068102 other upstream 111977 44906299 ~ 44906413 (-) True XLOC_035020
TCONS_00068110 other upstream 946170 45740492 ~ 45740608 (-) True XLOC_035026
TCONS_00068120 other upstream 1431922 46226244 ~ 46226360 (-) True XLOC_035035
TCONS_00068134 other upstream 3166855 47961177 ~ 47961293 (-) True XLOC_035046
TCONS_00068139 other upstream 3452712 48247034 ~ 48250085 (-) False XLOC_035050

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_14780225_14789500.mRNA True 2870 mRNA 0.42 18 CI01000026 14780088 ~ 14790709 (-)