RNA id: TCONS_00069287


Basic Information

Item Value
RNA id TCONS_00069287
length 253
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id XLOC_035025
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 45651099 ~ 45814324 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTGCGACAGGACGCACACACGGCAGTTATCAGGCGTTACTGACAAACAAATGAAGTGGCTTCAAGCAAAAGAACACATTTTTGTTGTGTCAGCACTCTGAGTCCTCCACCATCTGCTGCATCTAGACTCAAAGGCCTGAGGTGGATGACAGACACAGTGCCTTCTGAGGTCAGAAAACCATCACCTTCTGTTTGGACAGACGCAACACTGAAATACGAGCTTTGAGAAAAATTAAAGCTGGTACCAGTGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069286 lncRNA downstream 149063 45651099 ~ 45664239 (-) False XLOC_035025
TCONS_00068700 lncRNA downstream 397408 45414564 ~ 45415894 (-) True XLOC_035024
TCONS_00069285 lncRNA downstream 1078229 44730329 ~ 44735073 (-) True XLOC_035017
TCONS_00068092 lncRNA downstream 1199381 44611623 ~ 44613921 (-) False XLOC_035013
TCONS_00069289 lncRNA upstream 39376 45853651 ~ 45855961 (-) True XLOC_035028
TCONS_00068701 lncRNA upstream 119489 45933764 ~ 45937840 (-) False XLOC_035029
TCONS_00068702 lncRNA upstream 119491 45933766 ~ 45937840 (-) True XLOC_035029
TCONS_00068703 lncRNA upstream 136330 45950605 ~ 45958039 (-) False XLOC_035030
TCONS_00068704 lncRNA upstream 136346 45950621 ~ 45957253 (-) False XLOC_035030
TCONS_00068108 mRNA downstream 737171 45040526 ~ 45076131 (-) True XLOC_035023
TCONS_00068104 mRNA downstream 842308 44965773 ~ 44970994 (-) False XLOC_035022
TCONS_00068111 mRNA upstream 13854 45828129 ~ 45852270 (-) True XLOC_035027
TCONS_00068112 mRNA upstream 173816 45988091 ~ 45990681 (-) False XLOC_035031
TCONS_00068113 mRNA upstream 174523 45988798 ~ 45990386 (-) True XLOC_035031
TCONS_00068114 mRNA upstream 177773 45992048 ~ 45993499 (-) False XLOC_035032
TCONS_00068115 mRNA upstream 178075 45992350 ~ 45993416 (-) False XLOC_035032
TCONS_00068110 other downstream 72694 45740492 ~ 45740608 (-) True XLOC_035026
TCONS_00068102 other downstream 906889 44906299 ~ 44906413 (-) True XLOC_035020
TCONS_00068096 other downstream 1145185 44668003 ~ 44668117 (-) True XLOC_035015
TCONS_00068078 other downstream 2250062 43563124 ~ 43563240 (-) True XLOC_035008
TCONS_00068074 other downstream 2480560 43332628 ~ 43332742 (-) False XLOC_035005
TCONS_00068120 other upstream 411969 46226244 ~ 46226360 (-) True XLOC_035035
TCONS_00068134 other upstream 2146902 47961177 ~ 47961293 (-) True XLOC_035046
TCONS_00068139 other upstream 2432759 48247034 ~ 48250085 (-) False XLOC_035050
TCONS_00068142 other upstream 2439447 48253722 ~ 48257268 (-) False XLOC_035051
TCONS_00068146 other upstream 2442282 48256557 ~ 48263429 (-) False XLOC_035051

Expression Profile

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