XLOC_035023 (VSTM2B)


Basic Information

Item Value
gene id XLOC_035023
gene name VSTM2B
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 45040526 ~ 45076131 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068108
TCCCAAAGCTCGTCAGTCTGTCAGTGGTCTGGAAATGCCAAAGCGCCTCCTCGCTGCTcacgcgctcacacacacaaagcagAGCAGAGGTTCCGGTGGCGCGAGCTGGAACGAGCCACTGATGCCGCTTCTTCGTTTAGGTGCTTAACTGCTCCTTAAAAAACACCGAGGGAACCCTTGTCCTCCGACGTTGggcttttttcttttagtttttagtttttttgtggttCGCGGGTTAAGACACAGGATTGTTTTGTGATGGGTGGTGGAAGCGAATTGcggattttttctctttttatggAGATCGAAGTGAACAGATTTCCTACTGTTGAAAGCAAGTTTTATCCCGACAAGAAGCAAATGGTGGAACAGAGGATTCTTTAGGGGCAAAAAGGATATTTACTCAAGAGAATAACACTTTTCACGCGCAGTTTTCCCAACAGAGAAGGGGTTTTTTTTCTGGTccgcaacattggattggatttTACTGTTTGACTGACGCAGCATCCTTTTGGAGTATCTTATTTGGAGATTTCCGTCCTTTTATTCCACATTTCTGGGAAGAaactagagaaaaaaaaacaagttatggAGATGCCAATGAAATAAAATCTGCATATTCAGGTCAAATGACCGCTTTTACTCGTTTTCCCATCTGACCACCTTATTTATGACATGGAAAAACGAGGACCCCACAGCGTCCTTTATTATTTCATTCTTAATGCGCCCCTGCTACTCtgtgtaaatgCCACATTTTCTGAAGTGCCCAAAGATGTGACTGTCGGTGAGGGCGAGGACATAGAGATGCCGTGCGCTTTTCGAGCCGTCGGAGTCTCGCCGTTCTCCCTGGAGATTCAGTGGTGGTACCTCAAGGAAGCGGCCCCGAAAGAACTCGCTCACGAACTGCAAATTAGCGCTCCGGCCAACAGAGCCAAGGTGGCCCCCCGGGACGCCACGAAAATCAGCACGGTGAGGGTCCAGGGCAATGCCATTTCCCACAAGCTGAGCTTATCGGCTGTGAAGAAGGAGGATGAAGGAGTGTATGAGTGTCGGGTTTTGGACTTGTACTCAGATGAGACTCAGGAATTTAAGGTGCAGGCCACACTGCGCGTGACTCCACGCGAGGGAATGCTGGCCGAGGAGGCCGTGTCTCACATCCAGAACCGATGGCCTTTGAGGAACAGCAACACAGCGACAGGTGGACGGGCCACTTCTGAGCCGGGCCAGGGTCAGGGAAAACCCCACGTGCCTCCGCCGGCTGGAATGGGACCTGCTCCCGCCTCAACGACTACGACCAGCTCTGCAGTCAAGTCGTCCGCTTCGCCTCGGCCAGGCAATTCATCTATCCTGAGACAACAGCACGGATCCGGTTCTGGAACAATGGCGTCCACTGAGCCTCTTCTTTACATCACTCTACTGATCCTGTATAAGCTCCTCCCCTTCCTGTTTGCCTACTAAGAGACCACAGCCAAACAACTCGCAATTAATTCACTTTATGTACCAAACGACAAAGGGAAAATATAACtacttatatatataaatatatataaatatatctaccATTATGGCACATCACAGAAACAGGGATGGGTTTCgactttgg

Function

symbol description
vstm2b Predicted to be integral component of membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098810

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068108 True 1603 mRNA 0.49 5 45040526 45076131

Neighbor

gene id symbol gene type direction distance location
XLOC_035022 ciao2b coding downstream 69532 44965773 ~ 44970994 (-)
XLOC_035021 rrad coding downstream 77372 44960188 ~ 44963154 (-)
XLOC_035019 cdh16 coding downstream 83023 44857271 ~ 44957503 (-)
XLOC_035020 BX511136.2 coding downstream 134113 44906299 ~ 44906413 (-)
XLOC_035018 nae1 coding downstream 246204 44773912 ~ 44794322 (-)
XLOC_035024 NA coding upstream 338433 45414564 ~ 45415894 (-)
XLOC_035025 NA coding upstream 574968 45651099 ~ 45814324 (-)
XLOC_035026 BX511025.2 coding upstream 664361 45740492 ~ 45740608 (-)
XLOC_035027 shcbp1 coding upstream 751998 45828129 ~ 45852270 (-)
XLOC_035028 NA coding upstream 777520 45853651 ~ 45855961 (-)
XLOC_035017 NA non-coding downstream 305453 44730329 ~ 44735073 (-)
XLOC_035015 BX511128.4 non-coding downstream 372409 44668003 ~ 44668117 (-)
XLOC_035013 NA non-coding downstream 426605 44611449 ~ 44613921 (-)
XLOC_035011 BX842687.1 non-coding downstream 1031798 44002012 ~ 44008728 (-)
XLOC_035029 NA non-coding upstream 857633 45933764 ~ 45937840 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_14914431_14918358 VSTM2B coding CI01000026 null 14913882 ~ 14919195 (-)