RNA id: TCONS_00068087


Basic Information

Item Value
RNA id TCONS_00068087
length 1377
RNA type mRNA
GC content 0.37
exon number 8
gene id XLOC_035012
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 44599313 ~ 44605056 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGAGGGAAAGAAGTCAGTGGTGAGTTGAACACTGCAGCATCTCTTCTCTGAAAGATGGACGACTGAAAACAGTGAATGAGTTCTTGTCATTGATGTTTATGGGTCGTTGTTTTGATCAATTCTTCCACACTATTCAGATTTGTTTAGAGGGAAATATAGCAAGTGGAAAAACGACATGTCTGGAGTACTTCAGCAAGACCAGTGACATTGAGGTGTTGACAGAGCCTGTGTCCAAATGGAGAAATGTACAGGGATGCAATCCATTGGGATTGATGTACCAGGACCCGACTCGATGGGGACTCACTCTTCAGACCTATGTTCAGCTTACAATGCTGGATCAACATGTCTCGCCAATGGCATCACCTATCAGAATGATGGAGAGATCTATTTACAGCGCAAAGTACATATTTGTGGAAAATCTTTATaaaagTGGAAAGATGCCCGAGGTGGACTTCGCTGTTTTAAGTGAATGGTTTGAGTGGATCATCAAGAACATCTCTCTTCCTGTGGACCTCATTGTTTACCTGCAAACCTCACCACAGACCTGCCATGAGAGACTGAAGCAGAGGTGCAGAGAGGAAGAGAAGGTTATTCCCTTGGAATATCTAGAATCAATCCATAACCTGTATGAGGACTGGCTGATTCATCAGAAGTCATTTCATGTTCCTGCTCCTGTTCTTGTAATCCCTGCTGATCATGATCTTAAGAAGATGCTGCATCAGTTTGAGGAGAACAGAGAGAAGATACTCATGGCTCGTTGAGTAAAGGATCTGACAGAACGATGGTATATCAGTCTATAAATGTTTTCAGCTCTCTTGAAGACCGAAAAAAACAAGCACTTTTGACTTCAAACTGAATTTATAATATGTAAACATTCCTCTTGCAATGGAAGCTGACATGCATAGTAGGGTTTATAAATTCATAAattagatgttttatttaaatgctgcctgttatgttttgtgtgtgtttttttttttttttttgtcaatgaaGGTGTGATTTAAACATCtagctttattttttacctttatgGAATCATTCCATATTACATGAAACTACTGCACTTGGAAATGTTTGTATCGGTTCTTTTGTTGCATCAGTAGATGTTTTCTATTCAGAATGTTTATATTGGATCATATAGATGTTTAATATGTGCTTCAGTTACTACATTTACATTGACAACATCACACTCAGGTTTTACGAAGTATCCCTTTGTTTTATTTTCCTGTTCATTTTTTCTGTTGCCACTTGAAGGTAATTTCTAACAACAGATGTTATTGGCCAGTTTTGTGTTACTGAAATTATTACTGTGACCATTGTAATTTATACAACACAAggcattgttttaaataaaatgaaaacattgatTTTA

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0019136 deoxynucleoside kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0019206 nucleoside kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-243 Predicted to enable deoxynucleoside kinase activity. Predicted to act upstream of or within nucleobase-containing compound metabolic process and phosphorylation. Predicted to be active in cytoplasm. Is expressed in exocrine pancreas and pectoral fin. Human ortholog(s) of this gene implicated in autosomal recessive progressive external ophthalmoplegia with mitochondrial DNA deletions 3 and mitochondrial DNA depletion syndrome 2. Orthologous to human TK2 (thymidine kinase 2).

Ensembl:

ensembl_id ENSDART00000149186

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068086 lncRNA downstream 590585 44002012 ~ 44008728 (-) True XLOC_035011
TCONS_00069284 lncRNA downstream 813142 43761810 ~ 43786171 (-) True XLOC_035010
TCONS_00068080 lncRNA downstream 883874 43603962 ~ 43715439 (-) False XLOC_035009
TCONS_00068081 lncRNA downstream 883893 43638763 ~ 43715420 (-) False XLOC_035009
TCONS_00068079 lncRNA downstream 883894 43603957 ~ 43715419 (-) False XLOC_035009
TCONS_00068699 lncRNA upstream 6909 44611449 ~ 44613921 (-) False XLOC_035013
TCONS_00068092 lncRNA upstream 7083 44611623 ~ 44613921 (-) False XLOC_035013
TCONS_00068093 lncRNA upstream 7427 44611967 ~ 44612921 (-) False XLOC_035013
TCONS_00068094 lncRNA upstream 7531 44612071 ~ 44613894 (-) True XLOC_035013
TCONS_00069285 lncRNA upstream 125789 44730329 ~ 44735073 (-) True XLOC_035017
TCONS_00068085 mRNA downstream 741375 43761471 ~ 43857938 (-) False XLOC_035010
TCONS_00068082 mRNA downstream 758633 43760149 ~ 43840680 (-) False XLOC_035010
TCONS_00068084 mRNA downstream 758895 43761471 ~ 43840418 (-) False XLOC_035010
TCONS_00068083 mRNA downstream 811697 43760853 ~ 43787616 (-) False XLOC_035010
TCONS_00068068 mRNA downstream 2392593 41981366 ~ 42206720 (-) True XLOC_034996
TCONS_00068095 mRNA upstream 24141 44628681 ~ 44672095 (-) True XLOC_035014
TCONS_00068097 mRNA upstream 70416 44674956 ~ 44704910 (-) True XLOC_035016
TCONS_00068098 mRNA upstream 169372 44773912 ~ 44794322 (-) True XLOC_035018
TCONS_00068100 mRNA upstream 252731 44857271 ~ 44909540 (-) False XLOC_035019
TCONS_00068099 mRNA upstream 252731 44857271 ~ 44909540 (-) False XLOC_035019
TCONS_00068078 other downstream 1036073 43563124 ~ 43563240 (-) True XLOC_035008
TCONS_00068074 other downstream 1266571 43332628 ~ 43332742 (-) False XLOC_035005
TCONS_00068072 other downstream 1787144 42812055 ~ 42812169 (-) True XLOC_035002
TCONS_00068070 other downstream 2308219 42290978 ~ 42291094 (-) True XLOC_034998
TCONS_00068069 other downstream 2445789 42153410 ~ 42153524 (-) True XLOC_034997
TCONS_00068096 other upstream 63463 44668003 ~ 44668117 (-) True XLOC_035015
TCONS_00068102 other upstream 301759 44906299 ~ 44906413 (-) True XLOC_035020
TCONS_00068110 other upstream 1135952 45740492 ~ 45740608 (-) True XLOC_035026
TCONS_00068120 other upstream 1621704 46226244 ~ 46226360 (-) True XLOC_035035
TCONS_00068134 other upstream 3356637 47961177 ~ 47961293 (-) True XLOC_035046

Expression Profile

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