XLOC_035006


Basic Information

Item Value
gene id XLOC_035006
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 43254190 ~ 43256072 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068694
accacaacgatcactctcagttcggcgccatattatgggaatcaaaagatgaagattacagtacaaattgagaacgtgcacaaagctttccccaatgtggacacacaggtttacagctcaacctctaaagtcccatatctggctgaggagactgtggatcatccagtggaaaaaaaggtgtgaatgcatcctcaaagcccctaagtgagggagtacatggatgctgggcatgatgaagcgcaaaccttgatgtgcaacaccacctaatgaatctacagtagttacattaacatttagcagactcttttgtctaaagtgacttacaattgaggacacattcagcaaatcaacaagaagaggcaatacatccaagatgtgctaattataaaaaaaaaaaattaagaattaagaatgcttctacatgtggtttgtcaagcccacacacctgtgtgaagcagacttcatgcacaatgttttgttttatagatatagggagtggttgtaagaaagtgtctggtgcaaatgtgcataaatgatgcaagtgtcagagagatgaatgtgtgtagctattgcatgttctgtgatggttggtctaatttatagtgtagtgctgatcgtgttactttgctttaaaatgttaatctttcCTTGAACAACTAAAGTGTTATCTactttttcagtgtaaagaaggtacagtatagtttacaaaagaagacttgatttttctaagtatatttttgaaaaatcatttgaaggcagaatattatttttggatgtttttgtaatatatgaaaagtattattttgaaaagtgtattttatgatgtttttgtaagcatatttttgttaatcatttattgttttcaatttgcttcatacttgtattactattattttaatagtattaatattttaacttatt
>TCONS_00068695
gtggagtaatatctgcacatgcgcagtttcaaaacaacacaggaagtaagaagattcaaaccacaacgatcactctcagttcggcgccatattatgggaatcaaaagatgaagattacagtacaaattgagaacgtgcacaaagctttccccaatgtggacacacaggtttacagctcaacctctaaagtcccatatctggctgaggagactgtggatcatccagaacatcaccagtggaaaaaaaggtgtgaatgcatcctcaaagcccctaagtgagggagtacatggatgctgggcatgatgaagcgcaaaccttgatgtgcaacaccacctaatgaatctacagtagttacattaacatttagcagactcttttgtctaaagtgacttacaattgaggacacattcagcaaatcaacaagaagaggcaatacatccaagatgtgctaattataaaaaaaaaaaattaagaattaagaatgcttctacatgtggtttgtcaagcccacacacctgtgtgaagcagacttcatgcacaatgttttgttttatagatatagggagtggttgtaagaaagtgtctggtgcaaatgtgcataaatgatgcaagtgtcagagagatgaatgtgtgtagctattgcatgttctgtgatggttggtctaatttatagtgtagtgctgatcgtgttactttgctttaaaatgttaatctttcCTTGAACAACTAAAGTGTTATCTactttttcagtgtaaagaaggtacagtatagtttacaaaagaagacttgatttttctaagtatatttttgaaaaatcatttgaaggcagaatattatttttggatgtttttgtaatatatgaaaagtattattttgaaaagtgtattttatgatgtttttgtaagcatatttttgttaatcatttattgttttcaatttgcttcatacttgtattactattattttaatagtattaatattttaacttatt
>TCONS_00068696
gcgccatattatgggaatcaaaagatgaagattacagtacaaattgagaacgtgcacaaagctttccccaatgtggacacacaggtttacagctcaacctctaaagtcccatatctggctgaggagactgtggatcatccaggtactatgcctttagatgcctatacacacattaaaatgatgtacagtaaaaattactagtaattttaactactaattatttagtaaattactaattgtcatttcatgtcatttagaacatcaccagtggaaaaaaaggtgtgaatgcatcctcaaagcccctaagtgagggagtacatggatgctgggcatgatgaagcgcaaaccttgatgtgcaacaccacctaatgaatctacagtagttacattaacatttagcagactcttttgtctaaagtgacttacaattgaggacacattcagcaaatcaacaagaagaggcaatacatccaagatgtgctaattataaaaaaaaaaaattaagaattaagaatgcttctacatgtggtttgtcaagccca

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0090036 regulation of protein kinase C signaling biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:1901166 neural crest cell migration involved in autonomic nervous system development biological_process
GO:1903045 neural crest cell migration involved in sympathetic nervous system development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068694 False 921 lncRNA 0.34 4 43254190 43256013
TCONS_00068695 False 991 lncRNA 0.34 4 43254190 43256072
TCONS_00068696 True 542 lncRNA 0.37 3 43254671 43255989

Neighbor

gene id symbol gene type direction distance location
XLOC_035004 NA coding downstream 334166 42911710 ~ 42920024 (-)
XLOC_035003 NA coding downstream 346992 42904367 ~ 42907198 (-)
XLOC_035002 BX284620.2 coding downstream 442021 42812055 ~ 42812169 (-)
XLOC_035001 CU570782.2 coding downstream 865837 42386533 ~ 42388353 (-)
XLOC_035000 NA coding downstream 884266 42367745 ~ 42369924 (-)
XLOC_035007 BX005396.3 coding upstream 212264 43468336 ~ 43475531 (-)
XLOC_035008 BX005396.5 coding upstream 307052 43563124 ~ 43563240 (-)
XLOC_035009 BX005396.2 coding upstream 347885 43603957 ~ 43715439 (-)
XLOC_035010 cdh11 coding upstream 504077 43760149 ~ 43857938 (-)
XLOC_035011 BX842687.1 coding upstream 745940 44002012 ~ 44008728 (-)
XLOC_035013 NA non-coding upstream 1355377 44611449 ~ 44613921 (-)

Expression


Co-expression Network