RNA id: TCONS_00068695


Basic Information

Item Value
RNA id TCONS_00068695
length 991
lncRNA type inter_gene
GC content 0.34
exon number 4
gene id XLOC_035006
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 43254190 ~ 43256072 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtggagtaatatctgcacatgcgcagtttcaaaacaacacaggaagtaagaagattcaaaccacaacgatcactctcagttcggcgccatattatgggaatcaaaagatgaagattacagtacaaattgagaacgtgcacaaagctttccccaatgtggacacacaggtttacagctcaacctctaaagtcccatatctggctgaggagactgtggatcatccagaacatcaccagtggaaaaaaaggtgtgaatgcatcctcaaagcccctaagtgagggagtacatggatgctgggcatgatgaagcgcaaaccttgatgtgcaacaccacctaatgaatctacagtagttacattaacatttagcagactcttttgtctaaagtgacttacaattgaggacacattcagcaaatcaacaagaagaggcaatacatccaagatgtgctaattataaaaaaaaaaaattaagaattaagaatgcttctacatgtggtttgtcaagcccacacacctgtgtgaagcagacttcatgcacaatgttttgttttatagatatagggagtggttgtaagaaagtgtctggtgcaaatgtgcataaatgatgcaagtgtcagagagatgaatgtgtgtagctattgcatgttctgtgatggttggtctaatttatagtgtagtgctgatcgtgttactttgctttaaaatgttaatctttcCTTGAACAACTAAAGTGTTATCTactttttcagtgtaaagaaggtacagtatagtttacaaaagaagacttgatttttctaagtatatttttgaaaaatcatttgaaggcagaatattatttttggatgtttttgtaatatatgaaaagtattattttgaaaagtgtattttatgatgtttttgtaagcatatttttgttaatcatttattgttttcaatttgcttcatacttgtattactattattttaatagtattaatattttaacttatt

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0090036 regulation of protein kinase C signaling biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:1901166 neural crest cell migration involved in autonomic nervous system development biological_process
GO:1903045 neural crest cell migration involved in sympathetic nervous system development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069279 lncRNA downstream 334166 42911710 ~ 42920024 (-) True XLOC_035004
TCONS_00069278 lncRNA downstream 346992 42904367 ~ 42907198 (-) True XLOC_035003
TCONS_00068071 lncRNA downstream 865837 42386533 ~ 42388353 (-) True XLOC_035001
TCONS_00068693 lncRNA downstream 884266 42367745 ~ 42369924 (-) True XLOC_035000
TCONS_00068692 lncRNA downstream 898210 42354107 ~ 42355980 (-) True XLOC_034999
TCONS_00069280 lncRNA upstream 61506 43317578 ~ 43422226 (-) False XLOC_035005
TCONS_00069281 lncRNA upstream 61506 43317578 ~ 43423879 (-) False XLOC_035005
TCONS_00069282 lncRNA upstream 61506 43317578 ~ 43423919 (-) False XLOC_035005
TCONS_00068698 lncRNA upstream 61506 43317578 ~ 43423919 (-) False XLOC_035005
TCONS_00068075 lncRNA upstream 77133 43333205 ~ 43423919 (-) False XLOC_035005
TCONS_00068068 mRNA downstream 1047470 41981366 ~ 42206720 (-) True XLOC_034996
TCONS_00068067 mRNA downstream 1286019 41951967 ~ 41968171 (-) True XLOC_034994
TCONS_00068065 mRNA downstream 1289295 41951786 ~ 41964895 (-) False XLOC_034994
TCONS_00068066 mRNA downstream 1289295 41951967 ~ 41964895 (-) False XLOC_034994
TCONS_00068064 mRNA downstream 1289313 41947739 ~ 41964877 (-) False XLOC_034994
TCONS_00068082 mRNA upstream 504077 43760149 ~ 43840680 (-) False XLOC_035010
TCONS_00068083 mRNA upstream 504781 43760853 ~ 43787616 (-) False XLOC_035010
TCONS_00068084 mRNA upstream 505399 43761471 ~ 43840418 (-) False XLOC_035010
TCONS_00068085 mRNA upstream 505399 43761471 ~ 43857938 (-) False XLOC_035010
TCONS_00068087 mRNA upstream 1343241 44599313 ~ 44604540 (-) False XLOC_035012
TCONS_00068072 other downstream 442021 42812055 ~ 42812169 (-) True XLOC_035002
TCONS_00068070 other downstream 963096 42290978 ~ 42291094 (-) True XLOC_034998
TCONS_00068069 other downstream 1100666 42153410 ~ 42153524 (-) True XLOC_034997
TCONS_00068043 other downstream 1761059 41493017 ~ 41493131 (-) True XLOC_034985
TCONS_00068036 other downstream 1837883 41414590 ~ 41416307 (-) True XLOC_034982
TCONS_00068074 other upstream 76556 43332628 ~ 43332742 (-) False XLOC_035005
TCONS_00068078 other upstream 307052 43563124 ~ 43563240 (-) True XLOC_035008
TCONS_00068096 other upstream 1411931 44668003 ~ 44668117 (-) True XLOC_035015
TCONS_00068102 other upstream 1650227 44906299 ~ 44906413 (-) True XLOC_035020
TCONS_00068110 other upstream 2484420 45740492 ~ 45740608 (-) True XLOC_035026

Expression Profile

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