XLOC_035007 (BX005396.3)


Basic Information

Item Value
gene id XLOC_035007
gene name BX005396.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 43468336 ~ 43475531 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068077
gtcccaaaaaggaacatcattgacggtggccctcgggccacacgtggctttctaagccgcatggactttttcccgccacgctttctttattttccggcaaagtaaattcagtttaaagtttgcgatcgtgttcgtccgaactgcattacaaactccacgcatcaaaggacatcaagagtagtttcatcacgacggaagagagacgcataaaagagacctccagacatgaaaaaccagCATGGTACAATTTGACAGGAAGGCTCTTGAGATTGTGCTTAA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022616 DNA strand elongation biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006271 DNA strand elongation involved in DNA replication biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044452 obsolete nucleolar part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000101166

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068077 True 279 lncRNA 0.46 2 43468336 43475531

Neighbor

gene id symbol gene type direction distance location
XLOC_035005 BX005003.1 coding downstream 44417 43131218 ~ 43423919 (-)
XLOC_035006 NA coding downstream 212264 43254190 ~ 43256072 (-)
XLOC_035004 NA coding downstream 548312 42911710 ~ 42920024 (-)
XLOC_035003 NA coding downstream 561138 42904367 ~ 42907198 (-)
XLOC_035002 BX284620.2 coding downstream 656167 42812055 ~ 42812169 (-)
XLOC_035008 BX005396.5 coding upstream 87593 43563124 ~ 43563240 (-)
XLOC_035009 BX005396.2 coding upstream 128426 43603957 ~ 43715439 (-)
XLOC_035010 cdh11 coding upstream 284618 43760149 ~ 43857938 (-)
XLOC_035011 BX842687.1 coding upstream 526481 44002012 ~ 44008728 (-)
XLOC_035012 tk2 coding upstream 1123782 44599313 ~ 44605056 (-)
XLOC_035013 NA non-coding upstream 1135918 44611449 ~ 44613921 (-)
XLOC_035015 BX511128.4 non-coding upstream 1192472 44668003 ~ 44668117 (-)

Expression


Co-expression Network