RNA id: TCONS_00068062


Basic Information

Item Value
RNA id TCONS_00068062
length 1984
RNA type mRNA
GC content 0.44
exon number 8
gene id XLOC_034993
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41903540 ~ 41916505 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGCTTATCGCAAATTAGCAAAGGAATATCATCCTGACAAAAACCCAAATGCTGGAGACAAGTTCAAAGAGATTAGCTTTGCATATGAAGTTCTTACAAATCCAGAGAAGAGGGATATGTATGACCGCTATGGGGAACAGGGTCTGCGAGAAGGTGGCTGTGGTGGAGGTGGGATGGATGACATCTTTTCCCACATCTTTGGCGGTGGTCTGTTTGGTTTCATGGGTGGACAAGGCAGGAGCAGGAATGGAGGGCGACGGAGAGGGGAAGATATGGTTCACCCACTAAAGGTGTCTCTTGAAGACTTGTACAATGGAAAAACAACCAAATTACAGCTGAGCAAGAATGTTCTGTGTAGCACTTGTAATGGTCAAGGTGGGAAGTCTGGTGCGGTCCAGAAGTGCACAGCCTGCAGGGGGCGTGGCATGCGTATTATGATTAGACAACTCGGTCCTGGCATGGTCCAACAGATGCAGTCAGTGTGCACTGACTGTAATGGTGAAGGTGAGGTGATCAGTGAAAAGGATCGCTGCAAAAAGTGTGAGGGGAAGAAGGTGATTAAAGAGGTGAAGATTCTGGAAGTGCATGTTGATAAAGGCATGAAGCATGGACAGAAGATCACTTTTGGAGGAGAGGCTGACCAGTCGCCTGGAGTAGAACCTGGAGACATTGTTCTGGTCCTGCAGGAGAAAGAGCATGAGACATACAGAAGAGAGGGCAATGACTTGCACATGACTCATAAGATTGGCCTTGTTGAAGCACTTTGTGGGTTCCATTTCACATTGAAACACTTAGATGGCAGACAGATTGTGGTGAAATACCCAGCTGGCAAAATCATTGAGCCAGGTTCAGTCAGAGTTGTTCGGGGAGAAGGAATGCCCCAGTACCGCAACCCCTTCGAGAAGGGCGACCTGTTTATCAAGTTTGATGTGCAGTTCCCAGACAACAACTGGTTGAGCCCAGAGAAGCTGAAGGAGCTGGAAGACCTGCTGCCTACACGGGCCGATGCTCCAGTGATCTCTGGAGATGTGGAGGAGGTGGATCTGCAGGAGTTCGACATGAGCCAGAGCTCCTCTGGTGGTCACCGCCGCGAGGCCTACAATGACAGCTCAGATGAGGAAGGAGGACATCACGGACCCGGCGTTCAGTGTGCCCATCAGTAAACATGACTACAGCAGATAACGTCTCCAACAGTGGGGATTAAGAAAATGTTCTAGTTGCACAAACAGGTGTTTATAATCTGATTCAGGGCTGCCTTAAATGATGAGAATTACAAACAGCCATTCCTGACCGCCTGATTCCCTTGTAGTAAACGCACAGATGATCCTGCATATAGTAAAATCCTTTCTTGCCCCTGCGGCCCTCTAGACATGACCCCACTTCAGAGAGTAAAGGGTAAATGCTACGTTCTCTGTGTGTaacttgcatttattttttttgttgttgttgtcatggTATTTACAAGTTTAAATTGAAGTATAAATGCAGTTTTGGCCCTGGACTATTGTTGGAGAGCAGTGACCCAATGGAAGAGGAGTTTTGAGAGCTCCtaatacaacaaaaacaaataattaaaaaaaaaaggcaaccATGGGACTTGATCATCAATCCATTTTTAGGTTTGTTTATCTGTGCGCAGTTTTtaccactttattttatttgtagaccttttttttcctttctttgatATTTTAAGAATTGGAGCAAGAGACTATAATATGTATAAAAGAATTGATTGTCATTTAAGCTTTGTATCAGCTGCTGTCACATTTGCGTGTTTTGTTTTGAAATCGTTGAAATGAAATCAATTGCCTATATTTGTCAGCAATCCAGGTGCATGTTGAACATTCTGGCCCCTTCACGTCCATCAGAGAGACGTCATGCTGAAATAAAACGAGTGGAGGAAAAAAGCACCTTTAGGCTTATCTTCTGTGAAAAGTTTGAGTTGTTGAATAAAATGTCCTTCAATATCTCCTCAAAATAA

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0009408 response to heat biological_process
GO:0005829 cytosol cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0031072 heat shock protein binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2884 Predicted to enable several functions, including ATP binding activity; heat shock protein binding activity; and unfolded protein binding activity. Predicted to act upstream of or within protein folding and response to heat. Predicted to be active in cytosol. Is expressed in brain; neurons; and proliferative region. Orthologous to human DNAJA2 (DnaJ heat shock protein family (Hsp40) member A2).

Ensembl:

ensembl_id ENSDART00000159869

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068061 lncRNA downstream 22372 41875847 ~ 41881168 (-) True XLOC_034992
TCONS_00068056 lncRNA downstream 91185 41805086 ~ 41812355 (-) True XLOC_034990
TCONS_00068054 lncRNA downstream 126312 41764932 ~ 41777228 (-) False XLOC_034990
TCONS_00068053 lncRNA downstream 138436 41764304 ~ 41765104 (-) False XLOC_034990
TCONS_00068690 lncRNA downstream 194347 41707540 ~ 41709193 (-) True XLOC_034988
TCONS_00068691 lncRNA upstream 63076 41978388 ~ 41980012 (-) True XLOC_034995
TCONS_00068692 lncRNA upstream 438795 42354107 ~ 42355980 (-) True XLOC_034999
TCONS_00068693 lncRNA upstream 452433 42367745 ~ 42369924 (-) True XLOC_035000
TCONS_00068071 lncRNA upstream 471221 42386533 ~ 42388353 (-) True XLOC_035001
TCONS_00069278 lncRNA upstream 989055 42904367 ~ 42907198 (-) True XLOC_035003
TCONS_00068059 mRNA downstream 22302 41873080 ~ 41881238 (-) False XLOC_034992
TCONS_00068060 mRNA downstream 22363 41873282 ~ 41881177 (-) False XLOC_034992
TCONS_00068058 mRNA downstream 45027 41821314 ~ 41858513 (-) True XLOC_034991
TCONS_00068057 mRNA downstream 51935 41821311 ~ 41851605 (-) False XLOC_034991
TCONS_00068052 mRNA downstream 91185 41757462 ~ 41812355 (-) False XLOC_034990
TCONS_00068064 mRNA upstream 32427 41947739 ~ 41964877 (-) False XLOC_034994
TCONS_00068065 mRNA upstream 36474 41951786 ~ 41964895 (-) False XLOC_034994
TCONS_00068066 mRNA upstream 36655 41951967 ~ 41964895 (-) False XLOC_034994
TCONS_00068067 mRNA upstream 36655 41951967 ~ 41968171 (-) True XLOC_034994
TCONS_00068068 mRNA upstream 66054 41981366 ~ 42206720 (-) True XLOC_034996
TCONS_00068043 other downstream 410409 41493017 ~ 41493131 (-) True XLOC_034985
TCONS_00068036 other downstream 487233 41414590 ~ 41416307 (-) True XLOC_034982
TCONS_00068023 other downstream 954350 40948875 ~ 40949190 (-) True XLOC_034975
TCONS_00068010 other downstream 1352486 40538570 ~ 40551054 (-) False XLOC_034968
TCONS_00067999 other downstream 2187467 39715712 ~ 39716073 (-) True XLOC_034962
TCONS_00068069 other upstream 238098 42153410 ~ 42153524 (-) True XLOC_034997
TCONS_00068070 other upstream 375666 42290978 ~ 42291094 (-) True XLOC_034998
TCONS_00068072 other upstream 896743 42812055 ~ 42812169 (-) True XLOC_035002
TCONS_00068074 other upstream 1417316 43332628 ~ 43332742 (-) False XLOC_035005
TCONS_00068078 other upstream 1647812 43563124 ~ 43563240 (-) True XLOC_035008

Expression Profile

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