RNA id: TCONS_00068041


Basic Information

Item Value
RNA id TCONS_00068041
length 3867
RNA type mRNA
GC content 0.48
exon number 24
gene id XLOC_034984
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41491493 ~ 41512999 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACGCTGCAGTCACGTGTCTTGCCGTCAGCGAGCGCTGATTGGACGAGCAGTTTCAGAACGACTAGCAGAACTCAGGCGGTGTAGTTTATAAACAAGGGCCTACTCTTTTTATCGGCTTCTcggttattattatttgcttaataGATCTGAGGAAATCTCATCTAAATTGCCCCGAGTTCCGGCTGAATGGCAGAAGCCTCAGTTACAGACACATCAAAGTTGAATCCAGAGTCTGCAGAGTTTGTTCCAAAGGCTAAACTCAATCAGCCCGACTCTAGAAGAAGTTACAGACAGTCAAACCACTATCAGGACTGGAGGGCGAATCATGTTAGGCCTCACCATCACCTTAGACAATCCAATGCAGCTAATCATGGCGGCAATGAGTTCGAAAACCCTACTGATAATGCATTACCCTCTCCTGAACCAGCCTTCAGAGGAGGCTTAAGAGGCAGAGGCAGAGGAGGAAGACCAAGAGGAGGACGAGGTAATGGTGACACTGACCGTCGACTTCAGAGCCAGAGATGGATAAAACCAGTCAGTGATCGTGGTCATGATCGACCTAATACACCCACTTCTAATAGATCAACAGATGAGGAGAATAAAGAAAGAGCAACCTTTGAAGTCGATGTAAGAGAGCCTTATCGAGACAACCGATGGAAGAAACCCAATAAAGCAAGAGCTGAGAGGTTGATGAAGGAGCCTATGTCCAGAGACCAGGAGGAAAACCTAGAAAACCAGGCTGCAGGAAAAGACACAAAGCCTGTAGCTGTTTATGAACACCCCGAGCCTGAGCAGAGGAACCATAAGGGATGGAGGGGTGGCGAACACCGTATGCAGCCCAATTTCCGGAGGAAAGGACCAGGCCCTAGCCATGGAATTGAGGGTAACTGGAGAGAGAGGGAACCTGTTCAGATGAAAGAGGACGAGAGGAGAGGGGCTGAAGAGGAGGGTGAGAGACCCGAGGAGGCCAACAGGAATAGAAGGGGAATGAGGGGAAAACAGCCACCACTTCAGAATCCAGGTCCTAAGAGAGGTGGAGGTCCTGAGCGAAGAACAGGACCGGTGAAACGCATAGAACCTCCCAAAAGCAAAGAAACACAGACAGGTTGTCTAATTGAGCAGCTGACAGAGGAAAAGTATGAGTGTATGGTCTGTTGTGAAGTGATTCGGGTCATGGCTCCGGTTTGGAGCTGCCAGAGCTGTTTCCATGTATTCCACCTTAACTGCATCAAGAAATGGGCCCGCTCCCCTGCATCTCAAGCTGATGGTGATAGCAGTGAAGGTTGGCGTTGTCCTGCATGCCAGCACGTGGCACTGAAAGCTCCAAATTCATATACCTGCTTCTGTGGGAAGGTGAGCAATCCTGAGTTCCAGCGCACTGAGATCCCTCATAGCTGTGGCGATATGTGTGGTAAAAAGAGAAGTGGAGGAGAATGCAATCACCCCTGTAACATCTTGTGCCATCCTGGACCCTGCCCACAATGCCCGGCTTTTATCACCAAGtcctgtgtttgtggaaaaatgAGTAAGCAGGTGCGTTGTAGTCAGACAGGACCTCTGCTTTGTGAGGAAGTTTGTGGGACTCTTCTGAACTGCTCGCAGCACTCCTGTGCACAGGTGTGCCACTCAGGACCATGCCAACCCTGCCAACTTCGTGTCCAGCAAGTCTGCTTCTGCGGTGTGGTGTTCAGAGAGGTGGCATGTGGCACTGATTCTAAGAAGTTTGATGGATCAGGATATTTCTCCTGTTGCAAGCCTTGTGGAAAAATGCTAGATTGCCAGTCCCATCGCTGTCAGCAGTCTTGCCACCCTGGAGAGTGTCAGCCATGCCCTCTCAGCCCCAAGCTGGTGCGCAGTTGTTCATGTGGACAGACTCCCCTCTCTAAGCTTCTAGATCTTGGCTACCCTGAGAGAAAGGCCTGCACTGACCCGATCCCTTCATGTGGAAAGACCTGTAACAAGCCACTGCCATGTGGAGATGCAGATTCTGTCCACTTGTGTGAAAAGCTCTGCCATGAGGACAGCTGTGGACCCTGCTCACTGACCTCCTCTATTAAATGCAGATGTGGCAGCAACACCAAGGAAGTTCCTTGTGCAGCCATTCAGACTGAAGAGGACATGGTGTTTACCTGTGAGAAACGCTGCACCAAGAAGCGCTTATGCGGCAGGCACAAGTGTGGAGAGTTGTGTTGTGTGGATATGGAGCACAAGTGCTCAATGATTTGTGGTTACAAGCTCAGCTGTGGACTACATCGATGTCAGGACCTTTGCCACCGTGGTAACTGCCAGCCTTGTTGGCAAACAAGTTTCGATGAGTTGACCTGCTACTGTGGGGAGACTGTGCTCTTCCCGCCCATTCCTTGTGGCACCAGACCTCCTGAATGTAAAAACGTATGTACCCGGGATCATGATTGTGATCACCCAGTGTTTCATTCATGCCATAATGAGGAGAAATGCCCTCCCTGTACTTACCTCACCAAAAAGTGGTGCATGGGTAATCATGAGCAAAGGAGTAACATCCCATGCCACCTGCAGGACATCTCGTGTGGTTTAGTGTGTGAAAAGCTCTTACCCTGTGGTTCTCATCGCTGTAAGAGGATCTGTCACCGTGGGGAATGTCAGGCAGAGGGAGAATGCAAACAGCCTTGCACCCATCCTAGACCTGGCTGTGGGCACCCCTGTGGTGCTCCCTGCCACCCGGGCACCCCCTGCATACCCACTGTCTGCAGTGCCAAGGTGGCACTGCAGTGTGACTGTGGCCGCAAAAAAGAAACTGTTCCCTGTGCCGATGCAGCCAGTTCCTACCAAAGATATGCTGCTATTTCCGTGGCCAGTAAGCTGTCAGATATGCAGCTCGGGGAATCTGTTGACATTGGACAGCTCACAAAGAAAGAGCAGAAAAAGGCCAGATTGGAGTGCGATCAAGAGTGTGCTACCCTGGAGAGGAACAGgCGGCTTGCTGAGGCCCTGCAGATAGATCCCTCAGTGGATCCCTTCAAGTCAACATCTTCCAAATATACCGACTCTCTCAAAGAGGATGCAAGGAAAGATTTTAAGTTTGTCAGTGAAATCGAGGAAGAGATTAGGAATTTGGTTGAACTGGCTAACAAGGGTAAACAACCTAAAAGGAGTCACTGTTTCCCACCGATGAAGCGTGACCACAGGAGAATTATCCATGAGCTGGCCGAGGTGTACGGCGTGGAAAGCGTCAGCTATGATAATGAACCCAAGCGCAATGTGGTAATCACTGCCATCAGGGGGAAATCTGCGTGTCCCAACACTAGTCTGGCTGCTTTGATTTCAAGGGAAAGCTTTACCAGAGCCCCTCCTCCCATTGCCCACATCAAACAACACAACAGCAAgaCTGACAATGGCAACTCATGGATGAAAACCTCTAAAGATGAGCCCTCAATTGATTATTTTGATGTGCAGGATTGAAATCAAATTTCATATAGTCACTGTAACCATCTCTCAAAATAAATCTGTCTGAAAACTTTCACTATAGCTTAACATCTCTAAACACAAGTTGTTTACCAAAGAGCATTTAGAAGTTAAATTAGTTTGGTTTCTCTGTACATACTATATATAATGCTGGATGTACTTGTAAACTGAACTTACAATTTTAACTTAATCTGTAAACTTGAAGTTAACAACGAGTGTTAGAAGTGGATGCTAATAGGGTGAAGCTGAACATCGGCATCAAGAAGGTCTGGTAAGAATGTAATTTTACCTTGCCTTGTTAAGGAGGTGGAAATAAAGGAGCAAATGTGCATACCAGCTGTAATAAATACTTCTGGAAGCATGCTACATTTCCTTGAGTGTGAGATTGAATTTAATAAAAGGGGCATCAGCAGTTTCTTGGGTTG

Function

GO: NA

KEGG:

id description
ko05165 Human papillomavirus infection
ko03000 Transcription factors
ko04121 Ubiquitin system

Ensembl:

ensembl_id ENSDART00000173577

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069277 lncRNA downstream 87737 41401488 ~ 41403756 (-) False XLOC_034982
TCONS_00068034 lncRNA downstream 89247 41401491 ~ 41402246 (-) False XLOC_034982
TCONS_00068027 lncRNA downstream 476856 41012757 ~ 41014637 (-) True XLOC_034977
TCONS_00068020 lncRNA downstream 606788 40866815 ~ 40884705 (-) True XLOC_034973
TCONS_00068018 lncRNA downstream 842647 40647210 ~ 40648846 (-) True XLOC_034971
TCONS_00068048 lncRNA upstream 61546 41574545 ~ 41627907 (-) True XLOC_034986
TCONS_00068690 lncRNA upstream 194541 41707540 ~ 41709193 (-) True XLOC_034988
TCONS_00068053 lncRNA upstream 251305 41764304 ~ 41765104 (-) False XLOC_034990
TCONS_00068054 lncRNA upstream 251933 41764932 ~ 41777228 (-) False XLOC_034990
TCONS_00068056 lncRNA upstream 292087 41805086 ~ 41812355 (-) True XLOC_034990
TCONS_00068039 mRNA downstream 1496 41439136 ~ 41489997 (-) False XLOC_034983
TCONS_00068038 mRNA downstream 1671 41439136 ~ 41489822 (-) False XLOC_034983
TCONS_00068037 mRNA downstream 22551 41436488 ~ 41468942 (-) False XLOC_034983
TCONS_00068040 mRNA downstream 22742 41451793 ~ 41468751 (-) True XLOC_034983
TCONS_00068035 mRNA downstream 71267 41403690 ~ 41420226 (-) False XLOC_034982
TCONS_00068046 mRNA upstream 4174 41517173 ~ 41627956 (-) False XLOC_034986
TCONS_00068047 mRNA upstream 6781 41519780 ~ 41554047 (-) False XLOC_034986
TCONS_00068049 mRNA upstream 119929 41632928 ~ 41693004 (-) True XLOC_034987
TCONS_00068050 mRNA upstream 200921 41713920 ~ 41726657 (-) False XLOC_034989
TCONS_00068051 mRNA upstream 203086 41716085 ~ 41746427 (-) True XLOC_034989
TCONS_00068036 other downstream 75186 41414590 ~ 41416307 (-) True XLOC_034982
TCONS_00068023 other downstream 542303 40948875 ~ 40949190 (-) True XLOC_034975
TCONS_00068010 other downstream 940439 40538570 ~ 40551054 (-) False XLOC_034968
TCONS_00067999 other downstream 1775420 39715712 ~ 39716073 (-) True XLOC_034962
TCONS_00067983 other downstream 2256381 39234995 ~ 39235112 (-) True XLOC_034955
TCONS_00068069 other upstream 640411 42153410 ~ 42153524 (-) True XLOC_034997
TCONS_00068070 other upstream 777979 42290978 ~ 42291094 (-) True XLOC_034998
TCONS_00068072 other upstream 1299056 42812055 ~ 42812169 (-) True XLOC_035002
TCONS_00068074 other upstream 1819629 43332628 ~ 43332742 (-) False XLOC_035005
TCONS_00068078 other upstream 2050125 43563124 ~ 43563240 (-) True XLOC_035008

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_12712643_12726107.mRNA True 3292 mRNA 0.50 23 CI01000026 12712599 ~ 12726107 (-)