RNA id: TCONS_00068037


Basic Information

Item Value
RNA id TCONS_00068037
length 4256
RNA type mRNA
GC content 0.44
exon number 13
gene id XLOC_034983
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41436488 ~ 41489997 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gagagagagactcgaCAGAGcagcacacacagacagactgaaacacacacacacacacacagagagagagcagAAAGTCAGGGAAGTGGAGCAGGAGCCTCGCAGGGGGGTTGAGGAGGTGAGCGAAGGGTGAAAGAAGGGAGAGGGAAAGACAAAAGGCAGGAGAAGCGGAGGGAAATGGCTTCGGAGGAGACCGCTGGAGGAGCGCGCAAAGCCACCAAGAGCAAACTATTTGAGTTCCTCGTCCATGGAGTGcgaCCTGGCATGCCATCAGGAGCACGAATGCCACATCAAGGGGCTCCAATGGGGCCTCCAGGACCACCATATGGAGGAAGTCCTGCTGTCCGGCCTGGACTTACCAATCAGTCCATGGAGGCCAGTCGCAAACGGCCCAATCCTTCACAGCAGCAGATCCAGCAGCAGGCCGTACAGAACCGAAACAGAAATGCCAAGAGGAGGAAGATGGCTGATAAGATCCTTCCACAAAGGATTCGTGAGCTTGTTCCAGAGTCACAGGCATATATGGATCTGTTGGCATTCGAGCGCAAATTAGACCAGACCATAATGCGCAAACGGGTGGACATCCAAGAGGCACTTAAGAGACCCATGAAGCAAAAGCGTAAGCTGCGTCTCTACATCTCCAACACGTTTAACGCTGCCAAGCCTGATGCAGAGGACTCTGAAGGCAGCATTGCATCTTGGGAGCTGCGTGTGGAGGGCAAACTGCTAGATGATCCAGGAAAGATGAAGAGGAAGTTCTCCTCATTCTTTAAGAGTTTGGTGATTGAGCTCGACAAAGACCTCTACGGCCCTGATAACCATTTGGTTGAGTGGCATCGTACCGGCACCACTCAGGAGACAGACGGTTTTCAGGTGAAAAGACCTGGAGATGTTAATGTGCGCTGCACCCTGCTGTTAATGCTGGATTACCAGCCTCCTCAGTTTAAGCTGGATCCGCGTCTGGCTCGTCTGCTGGGCATTCACACACAGACCCGCTCCAGTATTATACAGGCCCTCTGGCAGTACGTCAAAACCAACAAGCTGCAGGACTCGCATGACAAAGAGTACATCAACTGTGACAAGTACTTTCAACAGATCTTTGACTGTCCACGTCTGAAGTTCTCTGAAATTCCCCAGCGCCTCACCAACCTTTTACTGCCCCCCGACCCTATTGTCATCAACCACATCATCAGCGTGGACCCTAATGATCAGAAGAAAACGGCGTGTTATGACATCGATGTAGAGGTGGAAGATCCTCTTAAAGCACAAATGAGCAGCTTCCTGCTCTCCACAGCCAATCAGCAAGAGATCGCCTCTCTGGACAACAAGATCCATGAGACCATCGAGTCCATCAATCAGCTGAAGATTCAGAGAGATTTCATGCTCAGTTTCTCCAGAGATCCCAAAGGCTACATCCAGGACTGGCTCAAATCCCAAAGCAGAGATCTGAAGCTGATGACTGATGTTGCGGGGAACCCGGAGGAAGAGAGAAGAGCAGAGTTTTATCATCAGCCTTGGTCTCAGGAGGCTGTCAGCCGTTACTTTTATTGTAAGATTCAGCAGAGGAGACAGGAGCTGGAACAGGCTTTGGCCTTGAGGAACACCTAGAGCTCACACACGAACAGGACGCCTCATTTGGGACAACACTGCCTCCATGTGGAGGACTCGCCATTACTTTCCACAGTGTTATGAGGGTTTGTGTGCTGTTGTCACTGTGATCTACAATCTACAATACTGGACCGTTGTACAGTACGTGCATTTCAGCCAATCACGCTGCCGCGTCTTCCATTTCTAGATCAAATCATCTCACGGTGCACTATTTGGATTTCTGTTTTTTAATACCACACGCACATTCACCAGCATTATGATCTCGAAGACTTCAGAGCCGGCTTTGTCTCGTAGATTTAGTCTGCACTCGTATTCGTTTTgatcaaaaaggtcattttataTATGCTGTTCAGTGGTGGAGCTACAATAATTAACTCCATTATTTACACTTCTATTCAAAGTGTATGTATGACGTAATTTGAGGGAGGCAGCTTTAAAGAGAGCATCATCAAGTATTAACTCAACTTGTGGCCTACAGGGTTTGCCACAATAATGACATTTAGCTGCCTTTGTTAGGTCAGCAGTGTACATAAACATGGAAAGATTGAAGGAGGTTGTTTTGATCACATTTTTAAAGGCTATTCTGCCATAGAAAGGCAGAACACATTAACTGCAACCATTGAATGAGAATACGGTTGAAAGATCATTTATTTGGCCTCAACTTTCACTCTACTCTTACTGAGTTATGTGTAGTTGCCGCATTTTTAGGACAGAACTGACATGATGGTTAGCTTTCTTTGAAGGAATTTGAGAAGCTTTCACATATGAAGAAATCATCCCAGTGACACAGGATGTTTGGAAATATGATCTGCCAGTTAAATTGTGATGTACTGAATACTGTGTCTGAGAAGATGTTTCAACACTATCTGAACTGCTGTTGGTGAACACTGATCCTTTATATTTTGAAGCTTTGCTTTTGGCGTATGCTGCACTTCACAGCATGTCAGATCAAAATATTTGAAAGATTCAATATTGAATCAGCACCTGGCCAAATTTGGTTTAGAGGTTGGGATACACACCTTGAGTGTAAATTAGGAACATTTGACATTTCTTTATGCTTCGCCAAAACCTATTTTGTGCACATGACCATCGTGGAGAATCCtgcatttatgtattcatttgatTGTTTCAGCAGTGCAGTTTAAATGACATCCTGTGGGCAATTGTGCCTGTCACTAGTGTCACTCCATATAACATCATCAGATGTTTCACCAAAgtctaaattactttttaaaagagtgtaCATATTTTGACTAGATGAAGGACTTTTTAAAAGATGAAGGACACGCCATTTTTCCTTAGCTGTGCGTTTTAAAATTGCTTTTTGACTCCTAGAGTCTTTGCACTAAATGGATCATGCTCCAATCGCTTTCCATTATGTCCCTTAAACTAAAGAATGAAGGATGAACAAGGGGAAGACATGTTGAAGTGTGGATCCACTATACTGCCACCCGGCTTGATCACTGCAGTATGGTTCTGAATTCTCCTTGGTTTACTGTCAGCTGAAGGATGGCTCGTCCAGGTCTGATGGTGTGTGTTCTTGCAGTGCCTGTGAACCTCGCACTCACATCTTCTCATGAGGAGGGAGAAGTCACCCAGAGTATTTTTTCAGACCTATGCATGCTGCATGGACACAATTTTATACTTTCATACAAGGACACGAGAAACCTTCTGACAGTTTGGGATTTGATCAGAAGAGCACTGAGTTTGCTTTGTGGCCCACTGTGTGTGGGACACGATCGCCTCTACATACAGCATCAACCTAACATGTATAGCAGAGGCCATTTAGGTCATTTGTTATGTTGAGtcgttttgttttgtcttttaaaaaGACTTTGCGATTTAATATGTGGGTATTAGAAGCACACTGACAATTTATACAGAGCCTGTTGGGGAACAACAGCACCTCCTATCGGGTCTTTTGGGTACTACATGTATAGTCAGCCATTTTGAACACGATCAACTTGAATTTGTATATCGGTAAAACATCTGCCTGTGTTGCTGCTGTGGTAGCAGCTGAACACGCTTTTCTGTTTCTGTGTGTAAAGTAATTTGCTCTTCAAGCCACCAAGTGTTTAGTGTTAGCATCTCTACTGCTTTTAATCGTAGCATATTTGCAGTAAATGCCTCATGCTGCTCTCCAGGGCTTCTGTAAGGGAAAATTATCCAAGATTGGGTGCTAATTGGCATCACTTTTGATTAAATGCCACACACGTATTTAAATACGTCATACTAGAGACTTTTGGACtttaaaatctttattataaCCATCAGGGGCCAGTTTCAGTAACCAAACCAACATGGTAATCAGTCTTGCTATTCAGATTCAATCTTacttttaaaatgactttaaaacaaattGTGAATTCTCAAGAAAAAAATgagatattttttattatctaGGCAGTGTGTATAGCTGGCCTCAGTGTTTTAGCGTCAAACCTATTTGATCCTGATTTGTTAGTTTAAGAACTGCCTAATATGAATATGGTTATAATGAACTCCTGtgtgtttcatttgttttgttttctcacagtCTGTTCGTTTTCTTCTGTTCAGCAAGAGATCAAAGCTACAGATATGCCTGTGTAAGATAGTGAGGATGTAAATAAACAAGCGCTTGCCAAAGTTTGTGAATGGAACACGAT

Function

GO:

id name namespace
GO:0006337 nucleosome disassembly biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0003007 heart morphogenesis biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0071564 npBAF complex cellular_component
GO:0071565 nBAF complex cellular_component
GO:0016514 SWI/SNF complex cellular_component
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080509-2 Predicted to enable transcription coregulator activity. Acts upstream of or within cardiac muscle cell differentiation; determination of left/right symmetry; and heart morphogenesis. Predicted to be part of SWI/SNF complex. Predicted to be active in nucleus. Is expressed in several structures, including brain; immature eye; margin; notochord; and tail bud. Orthologous to human SMARCD3 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3).

Ensembl:

ensembl_id ENSDART00000174087

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069277 lncRNA downstream 32732 41401488 ~ 41403756 (-) False XLOC_034982
TCONS_00068034 lncRNA downstream 34242 41401491 ~ 41402246 (-) False XLOC_034982
TCONS_00068027 lncRNA downstream 421851 41012757 ~ 41014637 (-) True XLOC_034977
TCONS_00068020 lncRNA downstream 551783 40866815 ~ 40884705 (-) True XLOC_034973
TCONS_00068018 lncRNA downstream 787642 40647210 ~ 40648846 (-) True XLOC_034971
TCONS_00068042 lncRNA upstream 22562 41491504 ~ 41495267 (-) False XLOC_034984
TCONS_00068044 lncRNA upstream 27317 41496259 ~ 41496730 (-) False XLOC_034984
TCONS_00068045 lncRNA upstream 27422 41496364 ~ 41498088 (-) True XLOC_034984
TCONS_00068048 lncRNA upstream 105603 41574545 ~ 41627907 (-) True XLOC_034986
TCONS_00068690 lncRNA upstream 238598 41707540 ~ 41709193 (-) True XLOC_034988
TCONS_00068035 mRNA downstream 16262 41403690 ~ 41420226 (-) False XLOC_034982
TCONS_00068033 mRNA downstream 33466 41401488 ~ 41403022 (-) False XLOC_034982
TCONS_00068032 mRNA downstream 39628 41348543 ~ 41396860 (-) True XLOC_034981
TCONS_00068031 mRNA downstream 97565 41329748 ~ 41338923 (-) True XLOC_034980
TCONS_00068030 mRNA downstream 140977 41275201 ~ 41295511 (-) True XLOC_034979
TCONS_00068041 mRNA upstream 22551 41491493 ~ 41512999 (-) False XLOC_034984
TCONS_00068046 mRNA upstream 48231 41517173 ~ 41627956 (-) False XLOC_034986
TCONS_00068047 mRNA upstream 50838 41519780 ~ 41554047 (-) False XLOC_034986
TCONS_00068049 mRNA upstream 163986 41632928 ~ 41693004 (-) True XLOC_034987
TCONS_00068050 mRNA upstream 244978 41713920 ~ 41726657 (-) False XLOC_034989
TCONS_00068036 other downstream 20181 41414590 ~ 41416307 (-) True XLOC_034982
TCONS_00068023 other downstream 487298 40948875 ~ 40949190 (-) True XLOC_034975
TCONS_00068010 other downstream 885434 40538570 ~ 40551054 (-) False XLOC_034968
TCONS_00067999 other downstream 1720415 39715712 ~ 39716073 (-) True XLOC_034962
TCONS_00067983 other downstream 2201376 39234995 ~ 39235112 (-) True XLOC_034955
TCONS_00068043 other upstream 24075 41493017 ~ 41493131 (-) True XLOC_034985
TCONS_00068069 other upstream 684468 42153410 ~ 42153524 (-) True XLOC_034997
TCONS_00068070 other upstream 822036 42290978 ~ 42291094 (-) True XLOC_034998
TCONS_00068072 other upstream 1343113 42812055 ~ 42812169 (-) True XLOC_035002
TCONS_00068074 other upstream 1863686 43332628 ~ 43332742 (-) False XLOC_035005

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_12663161_12672818.mRNA True 3109 mRNA 0.42 11 CI01000026 12661264 ~ 12672818 (-)
bowfin (Amia calva) AMCG00019084 True 1541 mRNA 0.61 12 CM030124.1 2409940 ~ 2434075 (-)