RNA id: TCONS_00068031


Basic Information

Item Value
RNA id TCONS_00068031
length 3407
RNA type mRNA
GC content 0.39
exon number 14
gene id XLOC_034980
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41329748 ~ 41338923 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAACAGAGACGAGCAGCATTCATGTGTTCACTGCTCACCGTGTTTTGAGGGAGCATGTCCTTCGTAAGCACCCTTCGCCAGTGGGATGAGGCCGTGGCTTGTGTGGAGCAAAGAGACCCAGACGCTGCTCTCAGGATATTCCTCAGTATCGAGGAGAAAAACTCCAAGATCGCTTTCAACATCGGCTGTCTTTGTCTGAACAACAGTGACTTAGATGAAGCTGAAAAGGCTTTTGATGGAAGCATTGGCAAAGATGAACACCTGGCCGTGGCCTTTTTTCAGAGAggagttacattttataaaaaggaAAAGTTTGAAGAGTCTCTTCTGGATTTCCAACAAGCATTTAAGCAGTTACGAGGGAATCAACTAATTGATTACACACCTCTGGGGCTGAGATATAAACTTTATGCTTGTGAGGTGCTGCACAACATTGGACTGGCACAGGCGCAGTTGGGAAAATGGGAAAAAGCTCAAGAGAACCTTCTCACTGCTCTGAGCTTGAGAGCAGATGCCAAGTTCAGCCATATTGATCATGCGCTGGATGCCATTCTGAAACATAAGCTGTTTCCTCTGGTAGAGGTTCGAGCAGGGCTGCTGTTTAAACCTAATAAGAAATATGTGGCAGAGCTGGAGAAAAGGGATTATCTTGGAAAAGCTAAGGTTGTAGCTTCTGTTGTACCTGCAGATGAGTTTTCTGGTTTTGCTCCACTTCAGCCTCAAATAGACAATGTTCCATCTATTCCGAAAGTTCCAGAAGTGCTACGGGTGCTGGAAGGAGAGCCACACACTGTTCTGTATGAGTTTGTTCCAGAGACTAAAGAGGAGCTGGCTGTGTTGCCTGGCAACATCGTCTTTGTTCTTCATAGAGGAACTGACAACTGGGCATCAGTTGTTTTCAATGAAAAGcgAGGTCTAGTGCCGTATAACTTTCTTGAACCCTTGGATATTGTTACAATGACATCAAAACCAGTCGAGACTGAAGCATTAAATGAAAATGATGATATACCTGCTCCACCAAGAAGAGCAGCACCTAGTAGACCAGTGGCTCCAGAAGGCCTGAAGACTGTGAATGCAAAGACTGTTAACACAAGGGAATTTTCCGGCTGTGTTGTAAAAGTGCACTTTCAGTTCACCATAGCAATCGCTATTGCACATGGTCAACCATATGGAGTCATTCTTCAGATGATAAGCTCTAAACTGAAGCTTCCTGCATCAACACTGACTTTACgGTATGCTAAGGAAGGCTCTGCAGAAAGAGTGATTATAGAGGACTCTGAAATGGAGGCTGTGTGGAACAGCGCGAAGGATGGCCGTCTTACCTTGTGGTGTTCAGTGACAGAGGGTAAAAGTGCATCCCATGCAAAGGTTGTGGCTCTTTACTCTTATGAGTCTTCAACCCCAGAGGATCTTGAGTTCAAGCAAGGAAACGTCATCACAGTTCTTTCTAAAGtCAATGACGAGTGGCTTGAAGGTCAATGCAATGGGAAAATAGGCATATTCCCATCATCCTTTGTTGAACCACTTAATGGAGATCCACACACATCCGCAgagtgaataaataatttatcTGACACTTATTTGTGCTTAAATTTGCTGATGAAATATAGCAGGATTTTGAGatgtaatttttacaaaaaaaaaatagttcacccacaaatgaaatgTTTCGCTTTAAACTTTAAAGGGCATCTTTTttacccctttttacaagatgtaagacaagcctttggtgtctccggaatgtgtctgtaaagtttcagctcaaaacacccatcagattattatgGCCTCCACAATCTCCCCATTTTGATGTCTGAGTtctttgtagctgtttttgtagcctgtggctttaaatgcaaatgagctgcttctccccgcccaccatcaTGCATCACATcaaataaacagcagtcagtgacagagacagacttggatgaagctgaaaaacagctcattagtcaaaaataccaagtaagtttatttcatgtatttgtggtggaatttattcaagcctttcgGAAATGATGAGTCttacacaaatgctgtttgcagtacacacacacacacacacacgcacttggtatttttgactgaTGAACTGTATTTCAGGTTCATCCGagtctgtcactgactgctgtttattcaAGCTGttttgaaatgatgagtctcacacaaatgccgtttgcagtataaaacacacacaaacacacttactgTATGTGAGAGTTTACTGACACTCTGTGGCTGTGGTGAATAAGAATTAGATatcaattttactgtatttattacaacCATGCTCCgttcaaaaaaaaactttttgatcTTATAATTAAAAAATCCCAAAGAGTTGTAACATATTTTAattccagtttatttgcaaaaaagttCTGTGGATGTGTGTACTACATGTTATTCTAAaaacatggtgcctgtcaatcaattaagtgggtggggaaaaccacactcctacgttaCGTTGGGCCTTAAAAATCACTAGGATGTGGGtcttattttaacatcaggaaataaaaaagagatttattgggtttatatcactcaaATACGACAGTGGACACAAACAAGCTACACAGTTACAAAAGTTActtttcattataggtgccctttaaatagtttatttactcaccctcaggccatcaagtgtgttttttttctcttcagtagaatattaaataatatttttagctAAAACTCTTTGGTGATTTACATAATTGAAATGAATGGTTAACAGCATTATAATAGTCACAAAAGAAAGGAAACGACAAAAGTAAATGTAGATAATTATGATTTAGAGAAATGATTAGTCCACGCACGAAACTGAAACAAATAACAAGCTTAAACCTTGACAAATGTTCCTGAGGACATTTACGACAGCTGTTGATAGCGACTGTCTAgaattttaaagaatatcaaaAAACTAATAATGGCTGAAATCATCAGTAATGCTCTATTGAGGAAATAAGACCCTCATCATTTCCTGAGGGTCAGTAAATTAACAGCTAATTCTAGGTAGAACTTTCCCTTTATTGTTACTACATTTACACTAGAGATTTGCTGCTGTACAGTACCTCATAACATGTTTTTGATGACTTCAAAGTATAAAGCTCAATCTTTTGTCTTCATTACAAACAAGATCACGTttatatttttctcatttaattgCTTAATTGCTCCACAGTTTGGCTACCATATTGGTATAATATagcacaaaaaagaagatatttatttACCTTGATTCATGTTTTTAGAGCAGTAAGTACTTGGCCTTATCAAGGGAATATAAAACATGCCCCCAATAGATGTTTTATTACTATATCAATACATGTAAAGTAATCTTTTGATGATTCCTGTGACTGTCCAACAGTAAACGAGTGTTATAATTTTT

Function

GO:

id name namespace
GO:0045730 respiratory burst biological_process
GO:0006909 phagocytosis biological_process
GO:0042554 superoxide anion generation biological_process
GO:0043020 NADPH oxidase complex cellular_component
GO:0005829 cytosol cellular_component
GO:0016176 superoxide-generating NADPH oxidase activator activity molecular_function

KEGG:

id description
ko04145 Phagosome
ko04613 Neutrophil extracellular trap formation
ko04670 Leukocyte transendothelial migration
ko04380 Osteoclast differentiation
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05140 Leishmaniasis
ko05020 Prion disease
ko05417 Lipid and atherosclerosis
ko05418 Fluid shear stress and atherosclerosis
ko05415 Diabetic cardiomyopathy
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-070209-29 Predicted to enable superoxide-generating NADPH oxidase activator activity. Predicted to be involved in superoxide anion generation. Predicted to act upstream of or within phagocytosis and respiratory burst. Predicted to be part of NADPH oxidase complex. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in Alzheimer's disease; autosomal recessive chronic granulomatous disease cytochrome b-positive type II; and rheumatoid arthritis. Orthologous to human NCF2 (neutrophil cytosolic factor 2).

Ensembl:

ensembl_id ENSDART00000099138

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068027 lncRNA downstream 315111 41012757 ~ 41014637 (-) True XLOC_034977
TCONS_00068020 lncRNA downstream 445043 40866815 ~ 40884705 (-) True XLOC_034973
TCONS_00068018 lncRNA downstream 680902 40647210 ~ 40648846 (-) True XLOC_034971
TCONS_00068015 lncRNA downstream 699078 40627646 ~ 40630670 (-) True XLOC_034970
TCONS_00068014 lncRNA downstream 699096 40627425 ~ 40630652 (-) False XLOC_034970
TCONS_00069277 lncRNA upstream 62565 41401488 ~ 41403756 (-) False XLOC_034982
TCONS_00068034 lncRNA upstream 62568 41401491 ~ 41402246 (-) False XLOC_034982
TCONS_00068042 lncRNA upstream 152581 41491504 ~ 41495267 (-) False XLOC_034984
TCONS_00068044 lncRNA upstream 157336 41496259 ~ 41496730 (-) False XLOC_034984
TCONS_00068045 lncRNA upstream 157441 41496364 ~ 41498088 (-) True XLOC_034984
TCONS_00068030 mRNA downstream 34237 41275201 ~ 41295511 (-) True XLOC_034979
TCONS_00068029 mRNA downstream 34392 41275201 ~ 41295356 (-) False XLOC_034979
TCONS_00068028 mRNA downstream 227250 41080649 ~ 41102498 (-) True XLOC_034978
TCONS_00068025 mRNA downstream 314975 41007773 ~ 41014773 (-) False XLOC_034977
TCONS_00068026 mRNA downstream 316173 41009771 ~ 41013575 (-) False XLOC_034977
TCONS_00068032 mRNA upstream 9620 41348543 ~ 41396860 (-) True XLOC_034981
TCONS_00068033 mRNA upstream 62565 41401488 ~ 41403022 (-) False XLOC_034982
TCONS_00068035 mRNA upstream 64767 41403690 ~ 41420226 (-) False XLOC_034982
TCONS_00068037 mRNA upstream 97565 41436488 ~ 41468942 (-) False XLOC_034983
TCONS_00068038 mRNA upstream 100213 41439136 ~ 41489822 (-) False XLOC_034983
TCONS_00068023 other downstream 380558 40948875 ~ 40949190 (-) True XLOC_034975
TCONS_00068010 other downstream 778694 40538570 ~ 40551054 (-) False XLOC_034968
TCONS_00067999 other downstream 1613675 39715712 ~ 39716073 (-) True XLOC_034962
TCONS_00067983 other downstream 2094636 39234995 ~ 39235112 (-) True XLOC_034955
TCONS_00067981 other downstream 2192974 39136650 ~ 39136774 (-) True XLOC_034953
TCONS_00068036 other upstream 75667 41414590 ~ 41416307 (-) True XLOC_034982
TCONS_00068043 other upstream 154094 41493017 ~ 41493131 (-) True XLOC_034985
TCONS_00068069 other upstream 814487 42153410 ~ 42153524 (-) True XLOC_034997
TCONS_00068070 other upstream 952055 42290978 ~ 42291094 (-) True XLOC_034998
TCONS_00068072 other upstream 1473132 42812055 ~ 42812169 (-) True XLOC_035002

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_12570957_12581387.mRNA True 1572 mRNA 0.42 12 CI01000026 12570795 ~ 12581513 (-)
bowfin (Amia calva) AMCG00005069 True 2192 mRNA 0.48 15 CM030140.1 14544822 ~ 14552948 (-)