XLOC_034978 (htr5ab)


Basic Information

Item Value
gene id XLOC_034978
gene name htr5ab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41080649 ~ 41102498 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068028
GAACAGTTGCGCTCGACAATAAAAAGCGGCACAATCCTGCACTTTGCGACATCTTCGTGTTGGTATTGTTGGCACGGGAAGTTTCTGACGTGTATATGAACCTCTGAATTGCTGAAGGCTGTACATTGAAGATCATCAATATGCGCAATTATAATGTCATCTGTAATCAGTATGGCGGCACTTTAAAACGCCTACCCTTTCAGTGACCAGCGTACAGAACTGTAAGTTAAAGAACAGTACGCTCACAAATTGTAGTGCCAAGAACACGACACCCACTCAGACAACGAACTCCTGCAAATATTTCCACATGAATGAACTTGAAAACggccaacaacaacaaaacatgccTGGCCACAAAACATCTGAAAAATCAATCCACTTCATCTACTCTCACCTTGTCCTCTAATGAGAGCCGTCACATGCTGCCATGACTCAACCCAATGTTACAGCTCTCTCTGCTAATATCTCTGGAGGATCTGAGTCGGGTAATCTGTACCGTCCATTTTCTGTCTTCAGCGTCCTCACACTCACTTTGCTGGCCATGCTAGTGGTGGCCACCTTTGTATGGAACCTGCTAGTTTTGGTGACTATCCTGAGGGTTCGCACCTTCCACCGTGTTCCTCACAATCTGGTCGCCTCCATGGCCATCTCGGATGTGATGGTGGCAGGACTAGTGATGCCCCTCAGTCTGGTGAGAGAACTCTATGGACGGCGCTGGATTCTGGGTCGGGCTTTGTGTCAAGTCTGGATCTCCTGTGATGTGCTCTGCTGCACGGCTAGCATCTGGAACGTGACAGCCATTGCCCTTGATCGCTATTGGTCCATCACACGCCACCTGGAGTACACGCTAAAAACAAGAAAGAGAATCTCAAATGTAATGATCGGCCTGACGTGGCTACTGTCCTCGGTGATCTCGCTTTCTCCACTCTTTGGTTGGGGCGAGACCTACTCTGAAGATAGTTTAGCTTGTCAAGTAAGCCAGGAGCCTTCCTACACGGTCTTCTCCACATTTGGGGCCTTTTATCTGCCCCTCTGTGTGGTGCTCTTTGTCTACTGGAAGATCTACAAGGCTGCCAAGTTCCGCATCGGCTCTCGCAAGACCAATACCATCACACCAATGGCTGAGGTCATAGAGGTTAAGGAGGCTGAACGGCAGCCACAGATGGCCTTCACGGTTCGTCACGCTACTGTATCGTTCCAGACGGATGGAGAGACGTGGCGAGAGCAGAAAGAGAGGAGAGCGGCTCTGATGGTGGGCATCCTGATTGGCGTATTTGTGCTCTGCTGGATTCCCTTTTTCCTTGCTGAGCTCATCATCCCGCTCTGTTCCTGCGACATACCTCCTGTCTGGAAGAGCGTCTTCCTTTGGCTGGGTTACTCAAACTCCTTCTTCAACCCACTCATCTACACTGCCTTCAACAAGAACTACAACAATGCATTCAGAAACCTGTTTTCCAGACAGCGGTGAGGAATGGAAATAGACAAGGATGGAGTGAAAAGCTTCAATGGAGTGAACGTCAACAGGAGCTTCTGTTCAGACAAAGCAAGGCCATGAGGATGAAGGCCGGTTGCCAGCAAACATCAAGAAACTGCAGGCTTCTTGTCGTCACAGGCTGGTGAGAAAATCTCTGCTGATGTCTACATGCTTTGAAAGTCGGTCACCATCTGTTAAACAGCAGTGCTGAGATAATGCAAATGTCCCTTTCCGCAAAAGCGAAACACCAAACTGCATGTAGACCATCTCTGAGAAAGAACTTTTCAGAAAGAAAGCATAGCTGATTTTGGTGATTGACCAGTGTGAATCATCAAAGCCGTTTTCTTCTAATAGCCAGTGAAGACGAAGTAGGCATGTGTACAATTTGGAGAAAATCTGGCCTCATTCACATCCTTTCACTTCTTCGAAAATGGCTAAAGAGTGATTTATTTTCCATCACATTTCCTTTTATTAAGAAGACATTTGATGGGATAAAGATGAGACGTAATTTCAGGGAGAGATGGAACAGACTTAAGTGGATGCAAGCAGAGACCGGATGAAAATTGTGAACAaaacagttattataaatgacCTCATACATGCCTTTGTTTGCAGGCAGCACAACGCCAGCATTTATGTACATTCACATGGATTCAGCTTATTTGTAAGCTACCAGTGTAGCAAAGAAGATGGACGTTACATGGCCTGAAATGAAAACATATACCTGCAGTTCTTTTGCGaaggaataaaaataaaggcTTACAGAAAAACATCAATCTTTGTATTCATGATCAGGAATCTGTGGGGTTAGTAAATAAAAAAGCGTAGTGTATGGGCTGTTCTTTGTCTTGATGCTGGAAGTCGTTTTTTGGATAGCCATGTCAAGGCTTGTCCACACATGTTCCAAGCTGAGCTTTGGGATCTTACTCTTCCTTTTGGTAAAAATACCCTGTAAATGCTAAAGTGATTAAGATGGTCTGGAATGGCAGCTTTGTTATGCCCAGGGCAGTTATCACAATGCTTCAAATGCAGAGAATCGTAAGTATGAGAGCACTGGCCTCACTCCGTCTCTTTGAAATACTGTCCATGTATCAGATCTGTCCATCAATTTGTCAGTTCATCCATTATCCATATAACACCCAGCTTCAGGGCAGCACAAAATTGTACATGTGAGTCTATGAGAATAGAAGAATGTCTGTGGTGAGAGCCAAAGAAATAAGGAGAGCCAGATACTGAGAGATTAAAAAAAGCAAATGGAAAGGCAGAGATTGAGAACCTGAGCACTCCATCTTAATGTGTTTAATTTCAGCATGGCTTTTCATATTTATAACTGTAAACAAAACAGTTATGATAAATACAAtaactttaaatacaaatgtaattcattcattttcttttttcggcttagtccctttaataatccggggttgccacagcggaatgaaccgccaacttatctagcacattttacgcagcggatgcccttccagctgcaaatcatctctgggaaacatccatacacactcacttacactcacacactacggacaatttagcctgcccaattcacctgtatagcatgtgtttggactgtgggggaaaatcagagcacctggagaaaacccacgccaacactgggagaacatgcaaactccacacagaaatgccaactgagccagccgaagctcgaaccagcgaccttcttgctgtgaggcaacaacactacctactgctccaccgcGTCGCCTACAAATGTAATATCATaaataactataactataataacagaaaatgttcaaATTGCTGAATGAACCACATTGTTCAACTTGACAGTAAGTTCACACATTTTGTCAGTGTTGGGATGAATGCTGTATCAGggtatctgcggggtcttaaaatgtcttacattttaaaaaccaaatgttaggctttaaaaagtcttaattttcctatgtccatgtaaagctataccCAATTGGGTCAACACTCATCCAATTactaacaatatattttaataaaggttttaagaaacattt

Function

symbol description
htr5ab Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Orthologous to human HTR5A (5-hydroxytryptamine receptor 5A).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007187 G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger biological_process
GO:0007198 adenylate cyclase-inhibiting serotonin receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007165 signal transduction biological_process
GO:0030425 dendrite cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function
GO:0004993 G protein-coupled serotonin receptor activity molecular_function
GO:0051378 serotonin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-574 Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Orthologous to human HTR5A (5-hydroxytryptamine receptor 5A).

Ensembl:

ensembl_id ENSDARG00000068557

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068028 True 3510 mRNA 0.44 3 41080649 41102498

Neighbor

gene id symbol gene type direction distance location
XLOC_034977 insig1 coding downstream 65876 41007773 ~ 41014773 (-)
XLOC_034976 en2a coding downstream 87193 40988901 ~ 40993456 (-)
XLOC_034974 rbm33a coding downstream 120782 40900212 ~ 40959867 (-)
XLOC_034975 CU041319.2 coding downstream 131459 40948875 ~ 40949190 (-)
XLOC_034973 CU041319.3 coding downstream 195944 40866815 ~ 40884705 (-)
XLOC_034979 kif9 coding upstream 172703 41275201 ~ 41295511 (-)
XLOC_034980 ncf2 coding upstream 227250 41329748 ~ 41338923 (-)
XLOC_034981 prkdc coding upstream 246045 41348543 ~ 41396860 (-)
XLOC_034982 BX322787.1 coding upstream 298990 41401488 ~ 41420226 (-)
XLOC_034983 smarcd3b coding upstream 333990 41436488 ~ 41489997 (-)
XLOC_034969 NA non-coding downstream 518948 40557036 ~ 40561701 (-)
XLOC_034962 BX908792.1 non-coding downstream 1364576 39715712 ~ 39716073 (-)
XLOC_034958 BX842701.1 non-coding downstream 1639599 39437384 ~ 39441050 (-)
XLOC_034985 BX005319.3 non-coding upstream 390519 41493017 ~ 41493131 (-)
XLOC_034988 NA non-coding upstream 605042 41707540 ~ 41709193 (-)
XLOC_034995 NA non-coding upstream 875890 41978388 ~ 41980012 (-)
XLOC_034997 CR759753.1 non-coding upstream 1050912 42153410 ~ 42153524 (-)
XLOC_034998 CR847539.1 non-coding upstream 1188480 42290978 ~ 42291094 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_12358411_12363689 HTR5AB, HTR5A, HTR5AA coding CI01000026 null 12357712 ~ 12364199 (-)