RNA id: AMCG00019084


Basic Information

Item Value
RNA id AMCG00019084
length 1541
RNA type mRNA
GC content 0.61
exon number 12
gene id AMCG00019084
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2409940 ~ 2434075 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGTCCAGGAATGCCCTCTGGAGCCCGGATGCCCCACCAGGGAGCTCCCATGGGCCCTCCCGGTCCTCCCTATGGGGGCAGCCCTTCAGTGCGCCCGGGGATGCCCAATACTGCGATGGAGCCCTCCCGGAAACGGCCCGCCGCCTCCCAGCaggtccagcagcagcagcaggtggcGCAGAACCGCGCAAGAAATGCCAAGAGAAGGAAAATGGCAGACAAGATCCTTCCTCAGAGGATCCGTGAGCTGGTCCCGGAATCGCAGGCCTACATGGACCTTCTGGCTTTCGAACGCAAACTGGACCAAACCATCATGCGCAAACGGGTGGATATCCAGGAGGCCCTTAAGAGACCCATGAAGCAAAAGCGCAAGCTGCGGCTGTACATCTCCAACACCTTCAACCCCGCCAAGCCCGACGCCGACGACTCCGACGGCAGCATTGCATCCTGGGAGCTGCGAGTGGAGGGGAAGCTCCTGGATGATCCTGGCAAGCAGAAGAGGAAGTTCTCATCCTTCTTCAAAAGCCTGGTGATCGAGCTGGACAAAGATCTGTATGGCCCCGACAACCACCTGGTGGAGTGGCACCGCACCCCCACCACGCAGGAGACGGACGGCTTCCAGGTGAAGCGGCCGGGGGACGTGAGTGTGCGCTGCACCCTGCTGCTGATGCTGGACTACCAGCCCCCCCAGTTCAAGCTGGACCCGCGGCTGGCCCGGTTGCTGGGCATCCACACGCAGACCCGCTCTGCCATCATCCAGGCGCTGTGGCAGTACGTCAAGACCAACAAGCTGCAGGACGCCCACGACAAGGAGTACATCAACTGTGACAAGTACTTCCAGCAGATCTTCGATTGCCCTCGGTTGAAGTTCTCCGAGATTCCCCAGCGTCTCACGAATCTGCTGCTTCCTCCCGACCCCATTGTTATCAACCACGTCATCAGCGTGGACCCCAACGACCAGAAGAAGACCGCCTGCTATGACATCGACGTGGAGGTGGAGGACCCCCTGAAGGGCCAGATGAGCAGCTTCCTACTCTCCACAGCCAATCAGCAAGAGATCGCCACCCTGGACAACAAGATCCACGAGACCATAGAGTCCATCAACCAGCTCAAGATCCAGAGGGACTTCATGCTCAGCTTCTCCAAGGACCCCAAGGGCTACATCCAGGACTGGCTCAAGTCCCAGAGCCGAGACCTCAAGGTGATGACCGATGTGGTGGGGAACCccgaggaggagaggagggcgGAGTTCTACCACGAGCCCTGGTCCCAGGAGGCCGTGAGCCGCTACTTCTACTGCAAGATCCAGCAGCGGAGGCAGGAGCTGGAGCAAGCCCTGGCAGTGCGCAACACCTAAGCCCGTCCCCCGGGAAGCAGCGGTGcgtccccctcctcctctcctccaccTGTGCCCAGCACCTGTGCCAGACGCCCCCCCTCTTCTTCGGTGTAGTGACCTGCTGTGACCTATGACCTGTGACCTGTGACCTGTGACTGGCTTCGTGTGTCGTCTCCTCTCCGCCCCGTCTTGCCATGCCGAG

Function

GO: NA

KEGG:

id description
K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39093 lncRNA downstream 60 2404414 ~ 2409880 (-) True G31218
TU38995 lncRNA downstream 232974 2176162 ~ 2176966 (-) True G31137
TU38845 lncRNA downstream 347979 1975704 ~ 2061961 (-) True G31021
TU38926 lncRNA downstream 476526 1932341 ~ 1933414 (-) False G31082
TU38916 lncRNA downstream 513508 1885673 ~ 1896432 (-) False AMCG00019059
TU39114 lncRNA upstream 40609 2474684 ~ 2474983 (-) True G31234
TU39116 lncRNA upstream 45863 2479938 ~ 2480415 (-) True G31236
TU39124 lncRNA upstream 59762 2493837 ~ 2494055 (-) True G31244
TU39125 lncRNA upstream 60641 2494716 ~ 2496567 (-) True G31245
TU39126 lncRNA upstream 66058 2500133 ~ 2509157 (-) True G31246
AMCG00019077 mRNA downstream 22791 2380537 ~ 2387149 (-) True AMCG00019077
AMCG00019079 mRNA downstream 52085 2342598 ~ 2357855 (-) True AMCG00019079
AMCG00019080 mRNA downstream 97540 2303870 ~ 2312400 (-) True AMCG00019080
AMCG00019078 mRNA downstream 111272 2291500 ~ 2298668 (-) True AMCG00019078
AMCG00019073 mRNA downstream 175423 2208790 ~ 2234517 (-) True AMCG00019073
AMCG00019085 mRNA upstream 37389 2471464 ~ 2484739 (-) True AMCG00019085
AMCG00019087 mRNA upstream 86838 2520913 ~ 2525129 (-) True AMCG00019087
AMCG00019092 mRNA upstream 204425 2638500 ~ 2657544 (-) True AMCG00019092
AMCG00019091 mRNA upstream 242240 2676315 ~ 2686173 (-) True AMCG00019091
AMCG00019093 mRNA upstream 324025 2758100 ~ 2759745 (-) True AMCG00019093
TU38988 other downstream 231290 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 326669 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 326669 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 699397 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 1086344 1321614 ~ 1323596 (-) True AMCG00019034
TU39603 other upstream 2498763 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 11228041 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 12057816 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 12057816 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 12517767 14951842 ~ 14991996 (-) True G33259

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00068037 False 4256 mRNA 0.44 13 NC_007118.7 41436488 ~ 41468942 (-)
grasscarp (Ctenopharyngodon idella) CI01000026_12663161_12672818.mRNA True 3109 mRNA 0.42 11 CI01000026 12661264 ~ 12672818 (-)