RNA id: TU39126


Basic Information

Item Value
RNA id TU39126
length 9025
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G31246
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2500133 ~ 2509194 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtcagtAATGTgctaaatttattttaaacatcattaacatttgtttgcttttctttatttgttttagttttaatgcatCTCTGAGAtaccataaaataattatttaaaaaaaaactaaataaaacaaacttcagCACTTGAAAGTCCTCGTGGATCGATGGACAAGCTTCATACAGTTGACCGGCAAGGCAGATTCCCAACAGTACCAGTACAAAACATTACAGCAAATTCTCACAGCTCTCCAGATTTAAACAGAAGGTTATAGGTCATAATTAAAccagaaacagaaatgaaatcATCTAATGATGCGCAAGGCCGAGACCAGATCAAtagcattcattttgtttcatctaCTCTACAATCAGTGTCTGTGATATTTGCCCCCTGAATTgcttaagaaaatacattaagtagaaaaaataaatttaataaaactttACCGTCAAGCTTTACTAAACAAACTGATCGATGCAATATCTTTTCTtggcatttgttattttcatttttagagggggaaaaaaaaaactcatttttGTGGGTGTATTTTGgcataagaaaattaaaaaagatatgGGGCTTTGTAACCTTTCACACCATCAGAGTTTCTCATTCGCTCTCTGCAAAGAAGCTGGGGGAATTAAACCAAAAGTGCACAGTAAAATCACAGTGCTTTCAAATCGGGACCTTTACTGGAACAGTACATCGATAGAAAGACCAGCTACCAGCAGAACAGCTTATTGTCATTAGATCAGCATGTTATACGTCACTCCAGTTTGTAGACTGGCCATCTGTGGCACACGTACAGTATATCGGTTCGAAATTTAacccacacacactttcaaCCGAAAGCTTGAAAAACCGCCTTGGATTTAGGtgctttattataaaacatttggtTAATCTCTACATGGTTGGCTTTCATTGACTCTAATCTTCAGTTTAATGTGTTACTTTCTTGACGGGACAGACTGGCGACGCATCCCGCTTCTCACTTAAGACTCTCGAGATCTGTAGACGAAGTGTTTAGGCACCACGACAGCACCAGAGAGAGCACTGCAATGTTCACGGACACGCACAGGTCTCCGCCTCATGATGACGCAACGTGCAGAGATCGATTTCGGCCTGGTACATTCCTCAGATATTTCAACAGGAATGCCATAAACAGGAACCCAAAACCACCCCAActgccccccaaaaaaacagcactgactAAGGTTTACATTATTGAAATGCCAGGATTAAAACTTCCAAAACAAgcatatagtttaaaaaaaaacagagggcATTGGATTTacacgcactcacactcacGCACAGTACACAGTACTTGGTAGATTTGAAATTCAACGTCTATAATCATTATAGTGGCGTCTGTTGTACAGGAATCAGCAGATTCAATGATTTGGTCTCACCAGCTCCCCCTACCGAGCAACATTTACATTACTCTGGGTTTCCCACCAAGTTATATAGCTTCTCAAACCTCAGAGAGTAACACAGAGCGCACCGTGAAGTCCTTGTGTGGCCCGTAACCCTCTTCTGTTCTCTAAAGTGTACACTTTTTGGGACAGGTTGACCAACGCATGACAACAAccaaatacaacacaaagaagAGCGGTCTTGCTCCATGACACTTCTAAATAAACATCCCAGAAAGAAGTGTCCATATCTGAAATGTTAGCTGCGTTACAATTCTCACTAGGAGTGCTGGAGCTCCTGTAGTTTATTTCAGTAACTTACAATAaactttctcctcctcctcgaTCCTGCAACTACAACGTTCTTGTGCTTAGCTTATTCAAATCTTTGGAGTAGTCCGAGAGGCTCTTTTATATCTGTACAAAGGGATTGAGATCTTGTAaaattgtgaatatttaaacttaaattatcAAAAGTATGGGACAGATGAcaggtttaaataaatgtaggaGAAACACGCAAGCACAGAAGGACAGCGTCTCTCACTGCCCAGCTGGCAGTTGAGAAGCCTGTTCTGCTAACCTGCACGCTGCCACAGTGACCGGAGACAAAGGTGAAGGAAACCCTTTGGAATCGTAGCTGATTCgcaacattattatttctctgtttGAGTCACAGTGCCACCTACTGCCCATTACAGCGTGTTTCAATGCAATAAGCAAACCTCCTCTGCTCTCACGGCCACTTGCTCGGTAACATCATTACCAGTCCTTTTGAAAACATCACCCACGCTTCCTGGTAGGAGGGGTTTTCGGTCCACAGACCCACCAAAACCGCGGTCACAGCAAAGGCTGAAACAAAGCCACTCTACGCAGATcaacaatacaaatcaatactgTTATGGGTTTTACCAAACTGAGATTGGGGGAAGgtctcaacacacacacacacacacacacacacaaacaaacaagaatattctacatttccaaaagagaaaaaaatattccttAAAAGACCTTTTGCAAACTACTGATATTGTCAGGGCGATGGATGCTATGAATCTGAGACGTACTAGCAGGACAAGCTACACAGTCATAGTGTACAGCAAaggcacagcagcagcacaacacACATCTTTAGACATGCTACTCTAGAGCCACACGGCTGTCGCAAAGCAAAACATCCCTTTACTGACCCACAACATAGAGAGCTGCTACTGGGTTCAAGGAGCACAATATGGGATTGTTAGGCACTAAGAAGATTTCATTCGCCACCGTGCTCCGTTTATTCTCCATACCTCTTACTGTTTCACTTTTACAGTCCTGACACTTTGCAGACAACAGGGTTTCCCCAGGACATGGGCCGGCCCAGACTTCAGAGCCAGCATCGGTACAAGCTGCAGGAACAATCGGTACATTCGTTTGCCCTAAGCTCTCTTATATTTAAGCCTTGTTTGTTAGTATGTTTTTATAAGAGCTGAAGCACAAAAGTAACTGTGATATTGGTTTAGTTCAATTCTAAGAGCTCACATACATTCAGTCACTTTTTATGATGATTCTAAAAGCACAATTCTGCATTCGCTGTTCTGCaatgaattaatacaattggaAGTGCGATTTGGATGTCATACCCTTGTCTTTAATTAAGCACTTGAGTCCTATTGGTCATCAGGGCTGAGAAGCAGCTGTCAGGGTGTTAAAATGAGTTTTCTTCAGCCACACGTCATAATTCAGACTGAATGGACTGGTCTTGATTCTTGACGATTAAGCTTTAAGGCTGAATTAAGGCTGAATTCTGCACATATGGATTATCAAGTTTTGAGAAAAGCAggatacaatttatattttcatttttatatttatatatttaaatcattgctAACAATAGATGTTAGTAAGACTTTTCTGGGGAACCCATGTCAACACAACGACAGACTTTTCAGCAGAGGTCATATTCTTGTCAGCTGCAGGAAAAAGCATTGGATTTAATTAATCTCTTAAAATGTCCCTTTCTGGTACCCTCAGAAGTCTGCAAAGTGCGGCCGCAAACGCATGGGAATCTGTACGGACACATTCCTGTTGCCTGCaactacaaactacaaacatCTTAAAAGGCTGTGAATTCCACAAATtaatagaacaaaaacaacaaaacaatggttGTAAATTCACTGTGATACACTAGATACACACGCTTATAAACATTTGTGGTCTTCAAAAGTCAATATTATTGCATAAAATACATTCCATGCCAGTTTAAAATCTGCCATTAAATGCCGattaacctgaaataaaaaaatacctgtTAGTGGGCTGATATGTCAGGGGTTAAGAAAACGCCACTAAACACCTTCCCTAGAGACTGCAcctcattttgaaaacaaagtatacaataaatcataataaaaacacagacaactTGCATTGtttgttcataaaataaaaagcttcttTTAGACTACGGTCTACCTGTACTCATTTCACATTACAGTGTATTGTAGCTAAGAGATGTACTGGATTTCAGTCTATCCCACCTCTACAGGTCAGGACACAGGTCTCAAATCACACCTCGAATACAAGCAAAGAcattcttacaaaaaaaaaagcttcattGTGAAATTAAGTACTGCAACATCGAACTGAAGTAAAAACCACAGCCTCCAAGCAACAGAAGGTCAAAGAAAGTGCTATCGACTGGTTTTATTGAACACAAGGACAGTCATCTGCCCAAACACCCCCCCAATGGGTTCACAACAATGCAAACTGAAATTCTGCTCATCGTATATGCACAGCTCAGAGAGCAAGTGGCCAAGACCGATCCAAACACGGTTTGCAGACGCCCCGTCCTGCAACTTAAAATCTCTCCACACAACTGCAGAACACATTCTTCCCCCTGCACTTCCATTAGAAAACATAACTTTTTCTCATTGTAATAAGAAAAAGTCTGAATGGTCCCTGTGCCCTGGTCAACAGCACTGCAGTCCAGTAAACGTCATCTGTACCTCATGAGATAGAGAACAGCAACTTGGAAGGAAATAGCTGTGAACTTTAAAGCTCCACATTAAAACACGTTTATATGCATCCTATACTCAATTTCACCTGGTGCTACATTTCAAATAACCTTCCAACGGGAACATTCGGGCTTAAGCTCCCCTCAACTGATGgcaggaaaaaactaaactggtGTAAAAGAGAAATGTCCAGATCTCAATCTGCTAGACCCAAACAGCAAAAACTGTCACaaacaattaagtaaaattCATGTTTCAAGGGAATGTGGAGCTTACAGATTTAGTGtcacacaaataatgtgttattccACCTGGTCACTAAcatgagagcgagagagagaacacGTTACTGTGCCATCTTCCATGTCAGAAAACTCACAAGAGATTAACAACGCCTTCATGGGCACTTAGTCAAAGCTTCACATTTGATCTAATTTACAGAGGGGTAAAGTAAATGGTCTGCTGAATGCTTATTGGGACTATTTGCAACACTGATAAAAACTTATACAATGAGTAATGCAACCATATTGCCTGATATGAATGATATAAGACTGCAGCTCCAATTGCCTACAGGTTGAGGCCACGACCCCCGAAACAAATAAACACCCCAATAAACACTATCCCAGTTCGACAACGCCTGTTTTTCATTCAGGCCATCTTCAATGTGCTCATGTTCAATCCTTTAGCATTTATCCATGTTCGATACTTCAGGGTTTACCCAACAATTTATCTCGGACGTTTCTGTAAAAGCAGTGAACACATTTCATTTCTCTCGCTCAATTTCAAATATCAAAAGTATAACCTGGAGTTTGTGAGAAAAAGCGAGCCCACTATATTACATCGCCTCCTTTATGTAAAACCCCAATTTGTCTCGTGTTCAGTAACTACTGGGGAAGTCTGCAAACGGGACTCTTGTTTCCAGTGGGCTTTCCTGACCTCTGACCACAGTAACCCTAATGCCTGTtatcacatgcatttaaaagaagGCCAATAGTCAACTACAGAAATAAGTACTTTATATAAAGTAAAACCATCATGCTACATGTATACTATACTTTCTCCTAACACACACCAAACCGctgaactgttttaaaaaacaaaatgaagacacAATCAATCAAAACGAGAAGGAAATTAACAAAACCGCAAAAgtcacaattttaaataattaaccgTAACATATACTGAGTAAAAAGAAAGGTGTAGAATATAGTATGCACAGTTCTTCACCGTTTTGGGAACAATATTAAAAGGCACATTTACCATAATACAATCCACTCCAAActgattaaaattaattctTTCCAATTCTCTTTACCGTAACACATACCGAACACATCAATACAGAACTTCCTGATCTACAGACCCTTTACATTCATAGAGAACTACACAAAACAACCGCTGTGgctacaaaacaatatataaaaatcaatgtaAACACATTCTAAGTTTAATGCACAAGcaaatcaacattttattttatacacaacTTGCgataaaaacacaactgttttaacttaatttcagaaggaaataaaacacaaattaagatCCTATGGCACACTAAATGTAttgaatcaaatcaaatcaatatattccagtttaattaagaaactCAAATTAGACCCTCTGGGATTTGTTTACCTGTAACCTGCTGCGTATGAGATTTAAATCAATGTCCAGTTTATAGATGGTCTGATTTGTTCCCCTCTCATTACAAAGTGGTAGTGGTTCAGTTTACACAGGTTTGTATCTCAGAGTCAACATGATGCAGAAGTAAATGCTCAATGTTCAGACCATCTATAAAATCAACACAGATGTGCGACAGAATCCACCTCATCATAAACTCGTTTATAATGATAAACTCCAATGCACAGTCCAGACACTTTGTTCTGGGACAGATGCCTTAAGCTACAGTGAAAATGAGGTAGATACAACTAATCAAATGATCTACAGAAATAGGAAACGTAAAAGTGCAAAGAGATATCAAAACTCAATAGCTGTCCGAGTTCGATTCATTTCAGGCGAACGTGAAACTATAACGGCACATTAACAGACGCACATATTCTCTGATCTGGACACACACGAGCAGTTTGGATACCGATATCAATGGATTATTCAATAGGTAGTTTATTCATTGACATAAACGAATAGTTATTTGGGATAACGCAGCGTACAGATTAATAAACCCAGAGGATCGTTCTCCGCTTGTTTGTTGTAGTGAAATATTTAGACTGTTATTTCTCCTGATTTACTCCCTGCgacattattgtttttcaaagttaAAATTGCGCAGGACCCCTCTTTCGACATCccacttttaaatgcatttgaactgCAAGTATTGACTGGAACTATTATTCGAACTACATGCATCAACAGTTTACAAGCGGCCCCCACCCTGGTCCTGCACAAGATCGCAGGGTCTTTGGGTTTCCGGTCCACCGGAGATCTAAACCGAACCAATCGAACTAATCTTCCCGGTTTGGAGAGTCTCGGTCCCTTGGAGAGAGCTGAAAACCCCAGACACGGGCGCCTCCGGGACAGGACATGGGGCCTTCACTCacatcaaaacatacaaaacatctAAATGCATTACACAATTGTTGAAGTGTTAAAAGTCTTCAATACAGTATTGACATGTGCGATAGAAATGTCGGACCTgttaaacatttagttttttcctgatctcaaatttgctttttttctttaaagttaTTTGTTCTACATTCACGATGCGTGTTTTAAGACATAAATCTCTAGTGATTGTCTAAGCCGAAGTCCAAAGACTAATTGACTagctttgatatatatatatttaaatatactgctacatttgaaaataaaattaaacaaacttatTAATAACAACCAGTTCAACAATAATAGCTTTGGTAACTTAGTATAGTTAGCTTTGTGAAAACACCTTGCACACATAAcccaaaaactaaatatttaatatacatttcctgAGTAAATATCGTTAAATCTGATCTAACAGGAAGGTTTTGAGTAActaaatgcattaaacattacactacatttaaataaacaatttaaatcattaaaataaatatggaatgcttttgaaaattataattcccttaatgtcataaaatatagatttaagtGCATACTAAGTTCAGATTTACTTATATTTAGCCACCAAAAGGTGTTAGTATGTCAAAATACTAATCCTGAGAAACAGCTCTTCTAACATTTAAAGTAATACCACGTGTAagtcaataaaaatacaattcaaacaaCTCGGTATCGATCTTCTGCTACGGCTTTAAAAGCTCTTCTGTAGTCGAGACATTCGCACTGAACAAAGGCTACCTGCAACTTAGCCCACTGCATCATGGGAAATGTCACTTAATACACCCAAAAGATCGGGAGAGGAAAACAGTTCTGCAGTTGCTTGGAAGGACTAACAGGCTACAGAAAAGTGCAACatgaatataaatgcatttagtaaacaacaacaacacaacaaactaCTGAAATGTGATCAGGAGTAACATTCAGGGTACGAGAGATTGCAGACACCTTGTTTTTGGCACTTGACGGTGGGCTGAGCATGGAGAACTGCACCCTACAGTACGGCGCGGTCTTTGGATGTAGGGGAACTCGCGGAGGCTAGCAGCGATCTAACTGCCGGCCTCCATCCCTCGCTTTTTAACACTGCGGAAGAAGACTTGCTAAGAAACGTATATAGAAGGAAAGTAAAGAGAGTTGAACCCATGACCCGCTCCAGAGCAACTGACAGAACTGCGATCCCACCCCCAACCACGATCGCTACAGGAGTTACACCGACttgttatttttagttattagTCACTTCTGctgtttagagaaaaaaaacaatctacaaTAGACACCATGGAAGTATGAACTACTGGAGAAGGTGAAGATAACTGACCATGTTAAGAGCGGTCCTTACAGCAGGTGATTCAGCAGTAAGGAGCACGCCCTAACCTCCCCATAATAGCACcttgggggaagaaaaagaacataaagaactattgtaaattgtaaacgGAGCGAACACAGAGACGGACAGGAAACGGAGACACCAATTGTGCGACACGGAGTGGACCTGGCGGAGCGACGGCACGACGTCTGTACCTCGAGCTGCAGGACAGGCGTCTCCCAAAGACCCTTTCACACCAGGAGGCACGACATGCACCTCCCACCTCTCACCTcctccttgtgtgtgtgtgtttacgaTTGTTCTAGATAACCAGGAGATTTCCCATGATGCACCGCCAGATCCCAAGCCCACAGGTGTCACTCGCCGGACACCCTGGAATCCTGCTCTCCCTGGCCCTCCCTGCCTGGCCCCGGACGCTCCTCCTCCGTTCTCTCCGGCTGCAGCAAAGCTCTCAGGGGCGTCTCGTCGCCCCCCCGGCCCTGCACCTCTCCCTCGACGGGGTTGCACAGCTCCCGCAGCGCCCTCTCCAGCTCCGCCTGCCTGGCTGGCGCCCCCACGCTACTCTTGGGCAGGGTCATCTGCAGGGCGCACCACAGGGCTGTGCGGGCTTTACGGGTGATCCCGCCCAGCTCCTTGATGGCCGCCGCGAGGGCCAGGACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39125 lncRNA downstream 3566 2494716 ~ 2496567 (-) True G31245
TU39124 lncRNA downstream 6078 2493837 ~ 2494055 (-) True G31244
TU39116 lncRNA downstream 19718 2479938 ~ 2480415 (-) True G31236
TU39114 lncRNA downstream 25150 2474684 ~ 2474983 (-) True G31234
TU39093 lncRNA downstream 90253 2404414 ~ 2409880 (-) True G31218
TU39214 lncRNA upstream 52318 2561475 ~ 2562794 (-) True G31296
TU39218 lncRNA upstream 57644 2566801 ~ 2571288 (-) True G31300
TU39249 lncRNA upstream 126027 2635184 ~ 2638120 (-) True G31329
TU39269 lncRNA upstream 345291 2854448 ~ 2856659 (-) True G31346
TU39287 lncRNA upstream 587552 3096709 ~ 3097340 (-) True G31363
AMCG00019085 mRNA downstream 15394 2471464 ~ 2484739 (-) True AMCG00019085
AMCG00019084 mRNA downstream 66058 2409940 ~ 2434075 (-) True AMCG00019084
AMCG00019077 mRNA downstream 112984 2380537 ~ 2387149 (-) True AMCG00019077
AMCG00019079 mRNA downstream 142278 2342598 ~ 2357855 (-) True AMCG00019079
AMCG00019080 mRNA downstream 187733 2303870 ~ 2312400 (-) True AMCG00019080
AMCG00019087 mRNA upstream 11756 2520913 ~ 2525129 (-) True AMCG00019087
AMCG00019092 mRNA upstream 129343 2638500 ~ 2657544 (-) True AMCG00019092
AMCG00019091 mRNA upstream 167158 2676315 ~ 2686173 (-) True AMCG00019091
AMCG00019093 mRNA upstream 248943 2758100 ~ 2759745 (-) True AMCG00019093
AMCG00019094 mRNA upstream 259623 2768780 ~ 2785358 (-) True AMCG00019094
TU38988 other downstream 321483 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 416862 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 416862 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 789590 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 1176537 1321614 ~ 1323596 (-) True AMCG00019034
TU39603 other upstream 2423681 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 11152959 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 11982734 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 11982734 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 12442685 14951842 ~ 14991996 (-) True G33259

Expression Profile