G31363 (jmjd4,LOC107727496,LOC107661892)


Basic Information

Item Value
gene id G31363
gene name jmjd4,LOC107727496,LOC107661892
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 3096709 ~ 3097340 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU39287
CTGAATCgtcaaacattttctgagacAAACCGAGGACCTCAAAGTGCTTCGAAGGTATGATGGAACCTCAGATGATACCCTGAAGCTTTTAACTTCCATCAGAGCACGTTCATCTCAACAGCCCCCGTGGGGAAGGCCTCCGTACCTGGCAGTGCTGGTGCCAGTTCTCCATGGTGCTCCTCCACTCCTCAATCTCGCTCTGCACTGCCGACAGCTCCCCTTGCAGGAACTGCCACACGATGTCCAGGTTACAGGCGTTCAGCCAGTTGTGATTGATGGAGATGGTGTCCTCCTAAAGCAACAGAGCCTTATCAAAACTGATGGCGTACGCCATGTGTTCAGTCAGGTAACCAGGCCCATACTTACCAAGTTATAGACCTGGTGATGCCACCCACTGGGCACAAAGATGACCTCGCCTGCTTCCTGGATGACTTCCAGAGGCTGGCAGGCCTTGTGGTATTGGGGGTACAGCTTCTCGTCCTGGAGGACGGGTGAGGTGACGTCAAAAGTGAGGTTGCCGTGGCAGTCTTTGAGGTATTCCTCCTGACCTGGAGGGTAGAGGAGCCACTTCTTCCTCCCACAGACGTTAGCTGACCAGCTGTAGGAGCGGAAGACATCGGCGTGGAAGGGAG

Function

symbol description
jmjd4 Predicted to enable 2-oxoglutarate-dependent dioxygenase activity. Predicted to be involved in positive regulation of translational termination and protein hydroxylation. Predicted to be located in cytoplasm. Orthologous to human JMJD4 (jumonji domain containing 4).

NR:

description
PREDICTED: jmjC domain-containing protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39287 True 632 lncRNA 0.54 1 3096709 3097340

Neighbor

gene id symbol gene type direction distance location
AMCG00019097 NA coding downstream 2513 3077890 ~ 3094196 (-)
AMCG00019094 wnt3a coding downstream 311351 2768780 ~ 2785358 (-)
AMCG00019093 wnt3a,LOC107661901 coding downstream 336964 2758100 ~ 2759745 (-)
AMCG00019091 arf1,arf3,LOC103038497,LOC102781726,LOC107671731 coding downstream 410536 2676315 ~ 2686173 (-)
AMCG00019092 NA coding downstream 439165 2638500 ~ 2657544 (-)
AMCG00019098 NA coding upstream 53490 3150830 ~ 3168130 (-)
AMCG00019102 NA coding upstream 74408 3171748 ~ 3173436 (-)
AMCG00019103 fzd8,fzd8a,LOC106578536,LOC102789550 coding upstream 200998 3298338 ~ 3300086 (-)
AMCG00019105 NA coding upstream 781356 3878696 ~ 4065944 (-)
AMCG00019110 NA coding upstream 1078135 4175475 ~ 4176838 (-)
G31346 NA non-coding downstream 240050 2854448 ~ 2856659 (-)
G31329 NA non-coding downstream 458589 2635184 ~ 2638120 (-)
G31300 NA non-coding downstream 525421 2566801 ~ 2571288 (-)
G31296 NA non-coding downstream 533915 2561475 ~ 2562794 (-)
G31246 NA non-coding downstream 587515 2500133 ~ 2509194 (-)
G31390 NA non-coding upstream 91387 3188727 ~ 3190187 (-)
G31399 NA non-coding upstream 114064 3211404 ~ 3211605 (-)
G31431 NA non-coding upstream 247517 3344857 ~ 3345240 (-)
G31444 NA non-coding upstream 505060 3602400 ~ 3602611 (-)
G31454 NA non-coding upstream 536516 3633856 ~ 3638241 (-)
G31130 NA other downstream 918059 2177980 ~ 2178650 (-)
G31082 NA other downstream 1013438 1932341 ~ 2083271 (-)
AMCG00019059 NA other downstream 1200277 1882454 ~ 1896432 (-)
G31035 NA other downstream 1386166 1705899 ~ 1710543 (-)
AMCG00019034 NA other downstream 1773113 1321614 ~ 1323596 (-)
AMCG00019109 NA other upstream 1123103 4220443 ~ 4229991 (-)
AMCG00019129 NA other upstream 1835009 4932349 ~ 4940667 (-)
AMCG00019128 gorasp1,LOC103377203 other upstream 1843719 4941059 ~ 4986384 (-)
AMCG00019165 NA other upstream 3583285 6680625 ~ 6684301 (-)
AMCG00019209 LOC106600477 other upstream 5749811 8847151 ~ 8901878 (-)

Expression


Co-expression Network