RNA id: AMCG00019079


Basic Information

Item Value
RNA id AMCG00019079
length 1335
RNA type mRNA
GC content 0.61
exon number 6
gene id AMCG00019079
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2342598 ~ 2357855 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTCACAAGTTGTGGGGCAAGTGTCCATGGGCAGAGGAGACTGTGGAAAAGAACCTGGGGCCCAGGGCAGGACGCAGCCTGCGCTGTGTGTTGCACCAGCTGGGACAGCACATAGAGCGGAGGAAGAAGGGTCCCGCGTCTCCCCCTGCTATGAGCGAGCCCCGGTCCCTGTGCTCGGGGCATGGCAGGACCCTGGTGCTGTACTGCGCGCAGTGCCAGCTGTGCGTGTGCCCGGGCTGCCTGGCGGGCGAGGGGCACCGCGGCCATGCCCTCTCCTGCTTCAGAGACGCGTGCAGGGAGCAGAAGGCGATGGTGGCAAGGACGCGGGAGTCAGTAGGCAGGAAGTACCTGGAGCTGAAGGAGCTGATTAAGCAGAATGAGCAGCAGACCTTTCGGCTGATAGCAGCCCAGCGCCAGGCCATGCTGCAGCAGTTGCACAAGCAGGTGGAGGAGAGCCTGGTCTTCAAGAGCACTGTGGAGAGTATGGAGCTGCTGAGGCAGGTGGTGGAGAAAAGCAGCAACTGCTACGACCCCACGGAACTGATGgaCATCTGTGCCCTCAGATTAAGTTTCGAATCGTTGGAGTCCTTCACTGGACAGCTGGGGCAGGAGATGCGCTTTGACAACAGACGGCTACGAGTGCTGGAGGAGTCGGTGGATCTGATTGTGCGAAAGAACAAGGAGTTTCTGCCCCGACCTTGGGAGTATGCTGAGAACCTCACGTTCGACAGTGCAACTGCTCACAAGAACCTGAAGGTCTCGGAAGACCGGAGGAAGCTCCGCTACGCCAGCATCCCCCTGAGAGTCCCAGCAACGCGGGACCGGTTTGACAGCACACCTGCTGTCCTGGCCTCCCAATCCTTCTCCTTTGGCAAGCACTACTGGGAGGTTGAGGTGGGAGGCAGGGAGAGCTGGAGCGTGGGCGTGGTGTACAGCGGCAGGGCACGCCAAGGCCGTGACGCTGCGCTGGGCCTAGACAGGAGGTCCTGGGTGCTGCAGCAGAGTGATGGGGAGATCCAGGCGCTGCACAATGGAGAGGGTATCCTGGTGCGGGAGAGGTGCGCGCGCCTGGGTGTCTTCTTGGACTGCGACAAGGGGCTCCTGACCTTCTACAGTGTGGACAGTGGGCACTCACTACACTGCTTCAAGCTGACATTTGCCAAACCCCTGAGCCCTGCCTTCAGCCTCAGCCAGGAGAAGGACACTAACTGGCCCCTGACGCTCTGCACCCTCATGCCACAAGACAACCAGTCTCCCCTGGTCTTCTGGGCAGCATCACCTGACCAGGTGGAGTCGGACAGTTCCTGTGACCGCAGTCTGAATAGCCGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38995 lncRNA downstream 165632 2176162 ~ 2176966 (-) True G31137
TU38845 lncRNA downstream 280637 1975704 ~ 2061961 (-) True G31021
TU38926 lncRNA downstream 409184 1932341 ~ 1933414 (-) False G31082
TU38916 lncRNA downstream 446166 1885673 ~ 1896432 (-) False AMCG00019059
TU39093 lncRNA upstream 46559 2404414 ~ 2409880 (-) True G31218
TU39114 lncRNA upstream 116829 2474684 ~ 2474983 (-) True G31234
TU39116 lncRNA upstream 122083 2479938 ~ 2480415 (-) True G31236
TU39124 lncRNA upstream 135982 2493837 ~ 2494055 (-) True G31244
TU39125 lncRNA upstream 136861 2494716 ~ 2496567 (-) True G31245
AMCG00019080 mRNA downstream 30198 2303870 ~ 2312400 (-) True AMCG00019080
AMCG00019078 mRNA downstream 43930 2291500 ~ 2298668 (-) True AMCG00019078
AMCG00019073 mRNA downstream 108081 2208790 ~ 2234517 (-) True AMCG00019073
AMCG00019074 mRNA downstream 138746 2191396 ~ 2203852 (-) True AMCG00019074
AMCG00019071 mRNA downstream 200645 2140521 ~ 2141953 (-) True AMCG00019071
AMCG00019077 mRNA upstream 22682 2380537 ~ 2387149 (-) True AMCG00019077
AMCG00019084 mRNA upstream 52085 2409940 ~ 2434075 (-) True AMCG00019084
AMCG00019085 mRNA upstream 113609 2471464 ~ 2484739 (-) True AMCG00019085
AMCG00019087 mRNA upstream 163058 2520913 ~ 2525129 (-) True AMCG00019087
AMCG00019092 mRNA upstream 280645 2638500 ~ 2657544 (-) True AMCG00019092
TU38988 other downstream 163948 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 259327 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 259327 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 632055 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 1019002 1321614 ~ 1323596 (-) True AMCG00019034
TU39603 other upstream 2574983 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 11304261 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 12134036 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 12134036 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 12593987 14951842 ~ 14991996 (-) True G33259

Expression Profile