RNA id: AMCG00019092


Basic Information

Item Value
RNA id AMCG00019092
length 3213
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00019092
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2638500 ~ 2657544 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGACGTGTTCCCTGTCGTCCCGCCGTGATGACGTAGCAGCGCAGCCTGTGAGTGATGGCTCTCCTGCGGGAGGACGGCTAGTGAGCGGCGGGCCGGCGGGGCACACGGCACATGTATCTCAGGGTTTTCTCCAGACTGCTGTCCGCCGAGGGGGGTGCAGTGAGGAGACCTGTCCTGTGTACGCTCCAGGGCTGTATCTCGCCCCCGGCCTGTGCGCTGCAGCAGATGAGCAGATGTCTGGGCTGCACAGTTTCCATTGGCTGGCGCTGAAGAGGAGTGCAATGGCAGGACCAAGACCTGTGGTGCTGAGTGGGCCGTCCGGCGCTGGGAAGAGCACCCTCCTCAAGCGCCTTCTCAAGGAGTACGAGGGCGTCTTCGGCTTCAGTGTCTCACATACGACAAGAAACCCCCGCCCTGGAGAGGAAAACGGCAAAGAGATCCCCTTCTGCCGTAAAGAAGGTTGTGAGGTCTGCCTGAAGGCCGAGCTACCCCTGGCCTTCACCCCCTCCATCAGCTGGCAGCCAAGGACAGGCGATTACCATTATGTGACCAGGGAGGTGATGCAGAGGAGGATAGAGGCTGGAGAATTCATTGAGAACGCGGAGTTCTCCGGGAACATGTACGGGACCAGCAAAGCATCGGTGCAGGACGTCCAGGCCAAGAACCTTATCTGCATCCTGGACATCGACATGCAGGGCGTGAGGAACATCAAGCAGACCGACCTCAACCCCATCTATGTGTCCATCCAGCCGCCCTCCATGGCCATTCTGGAAAAGAGGCTACGAGACCGACAGACCGAGACCGAGGAGAGCTTACAGAAGCGCTTGGCTGCAGCTCAGGCCGACATGGAGATCAgcaaTGAACCTGGTCTGTTTGATGTTGTAATTGTTAACGACGACCTGGAAGAAGCTTATGGGAAATTAAAAGGCGTTCTCATTGAGGAAATCGAGAAAGTCCAGGAAGCCAAGAAGTCGTAGAAGGGGAACCCCGGCGCAGTCTGCCTCGCAGGGACCTCCTGACACAACACCGGCCTTCCTCTGCGGTTCCCATCATTCCCTCTGCTGGAGCACTAACCAGAACCAGCAGCCCACCGGTTGCGTTTTAACTGCAGATTTTACCTTAGGAGTCCCCAGGTAGATTTTTAACATGTTTGTGAAAGTGAAGatactttaatattttctaggtttacatgtatataattagaaggccattttatctttttttcctgtACCTGGTGGTTAATAAccccacacttttttttatatttaaattatatacttCTGAATTTCCTGTACAGTACAATGCATTCGAGCTCTGTGCTGCCAGAGACTGTAATTGTCGCCGGACTGTTTCCTTGCCTCGGCCGAGTGTCGTCATTAAAGCAGGGCAGCGTTAACAATCAATTATCTCGTGTACGGACACAGAAAACATATTGAACGAAGACGTATCCTTATGCATGGATCTGTGAGACTTCGCTCATTCCAGTAAtgctgtggggggggtgtaGGTGGCGAACGCACTCAGAAGTGCGTCCGGGGCAGCTGGCGGTGGCTGGCAGACGTTTTTTCTTTCCGTTGGCATGTGGAGCATTCGTTGAGGTTATCCATCTATAATTATTCCACAAGCCACCCAACTGCATGCATCCATTTTCTGTCTTGCCTTTCCGAGTTGCCTGCGGACACTTGGCCGATCGGTCTGACTGCCAGGATAGTTCGCGGCACTGCGGTGATGCTGCTCGGGTTGTCTCTGTACCGGGAGCGTGGGCATCCCCTGACTGAGGAGAGACGCTCTTCTGTCACCTCAGGAATTGGCTCGTAcgtgtgcatttaaaataaatccataataCATTGCTGTTTGGGCGCTGCAGCTGGAACAGTGCACTCTTGCGCTAACGTTTGCCAGCTCAGCGCATGTCATGTCAGGGAATGTCTTCTCAATCACTTCCATTCCAGAAGCTTTTTAAAATCGATACAGTTCCATCCCGACTTCCGTCTGAGGGTCACAGCCATTGTCACACCCCAGCCAACGATGTCCTTCATCGCTTGGCCTCACAGTCACTCGAGATCTGTCCTCCAAACCTGAACACACGGACGGTACCAGAAACTACCAGAGCCGCAGCGGGGATTTAGATTCAGGCCGGCGTCCATGAGTGGCAGAGGAAGGAACAAATCGGTCGTTTCGGAGTCCTCTGTAATCAAGAGACTTTGGAAATCTGGGTCAGCTAACCCGGGTGTTTTGTATTCTTCGAGGCCATATATCTGTATTGTAGCCAAGGCATCCCCAGCTAAGAAGCCAAGGTGGCTTTCTAGTCTGATTATCTGCGTCTGGCATAGGGGTACATTGTAGGTTGATCTTTCTGGGCTCAATACTTTGACAGTGTGACGTACATTTATAAATCCATATACCTGACCCACACATCGGATAAGCAATCCACTTCTCACACAGCATCTAACGTGctataaacacaaatatcatggctatatgtatgtttatacagATGTAAcctgtaatgtactgtaatatgTTATAGAGTGGCCCTTATATCTTGTAGAGAGCATTGAGgatgtttaattaacaaaaaaggtaaaaacagGGGTGGAAAGTGTACAAAAAATAGAATCTGAAAAAAAAGATCTGATGATGTAAATATACGTACTGCTGCTTGCATGCACAGTCCACACATTCGAGAACTTCCTGGAGTCGTTTTTAAGATGATTGGATTCGGCcatctctttgtttttgttttttgtttttttaattatctgagTTTTGATATTTCTAGGTGGTAAAGTTGCCgaattttatattgtatgtgttgttttatatattttttaaaaaagacagcagtttgtgtttgttttgtgaggAGCCCTGGTTAGTTTACGATGAGCGCCGATCTCCGATGTCAATGTCTTACTCTGAGGTCGACTGGACGACCTGGACGGCGTAATAATGCAAAGAGTGTCACAGAGAGGGCGGTTCTGTGGAAAGGAGTTCctgaattaatacaaaaaaaaatcatgtaaCTAGGAATTTTAAAGGAATAAGTACACTTAACCATCCACACTTACTTGAAATGCGCTATTGGTTCAGTAGTAAAACTGAAATCTCTTCCACCAGCGTCTGTATGAcgagtgtgtgtttctgtgcaacGTGTCCTGTATGCTGCTGTGCTATCTGAATAAATCCCACGTGAGACACTCCATACA

Function

GO:

id name namespace
GO:0006163 purine nucleotide metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0004385 guanylate kinase activity molecular_function

KEGG:

id description
K00942 E2.7.4.8, gmk; guanylate kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39249 lncRNA downstream 380 2635184 ~ 2638120 (-) True G31329
TU39218 lncRNA downstream 67212 2566801 ~ 2571288 (-) True G31300
TU39214 lncRNA downstream 75706 2561475 ~ 2562794 (-) True G31296
TU39127 lncRNA downstream 129306 2502108 ~ 2509194 (-) False G31246
TU39126 lncRNA downstream 129343 2500133 ~ 2509157 (-) True G31246
TU39269 lncRNA upstream 196904 2854448 ~ 2856659 (-) True G31346
TU39287 lncRNA upstream 439165 3096709 ~ 3097340 (-) True G31363
TU39319 lncRNA upstream 531183 3188727 ~ 3190187 (-) True G31390
TU39328 lncRNA upstream 553860 3211404 ~ 3211605 (-) True G31399
TU39363 lncRNA upstream 687313 3344857 ~ 3345240 (-) True G31431
AMCG00019087 mRNA downstream 113371 2520913 ~ 2525129 (-) True AMCG00019087
AMCG00019085 mRNA downstream 153761 2471464 ~ 2484739 (-) True AMCG00019085
AMCG00019084 mRNA downstream 204425 2409940 ~ 2434075 (-) True AMCG00019084
AMCG00019077 mRNA downstream 251351 2380537 ~ 2387149 (-) True AMCG00019077
AMCG00019079 mRNA downstream 280645 2342598 ~ 2357855 (-) True AMCG00019079
AMCG00019091 mRNA upstream 18771 2676315 ~ 2686173 (-) True AMCG00019091
AMCG00019093 mRNA upstream 100556 2758100 ~ 2759745 (-) True AMCG00019093
AMCG00019094 mRNA upstream 111236 2768780 ~ 2785358 (-) True AMCG00019094
AMCG00019097 mRNA upstream 420346 3077890 ~ 3094196 (-) True AMCG00019097
AMCG00019098 mRNA upstream 493286 3150830 ~ 3168130 (-) True AMCG00019098
TU38988 other downstream 459850 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 555229 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 555229 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 927957 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 1314904 1321614 ~ 1323596 (-) True AMCG00019034
TU39603 other upstream 2275294 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 11004572 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 11834347 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 11834347 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 12294298 14951842 ~ 14991996 (-) True G33259

Expression Profile