RNA id: AMCG00019077


Basic Information

Item Value
RNA id AMCG00019077
length 1371
RNA type mRNA
GC content 0.55
exon number 10
gene id AMCG00019077
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2380537 ~ 2387149 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGTCTGATCTGGCCAAGAAGAAGGCCGCTAAGAAGAAGGAGGCAGCCAAGGCCCGGCAGCGCACCAAGAAGACCGATGAGAACGAGGAGAGACCAGAGGGCCAGGAGAACGGGGCTGAGAACGGCACTGAAGATGGCGACCTGGTCATGATTGTAATTTTCCCTCCTTTGTGTCTTCTGATAGAAGTGGCCATGCTGGCCAAGGAGCTAGATGAGTTTGAGATGAAGAAGACGGCCGCTCGGGCTGTCACCGGTGTGCTGGCCTCCCACCCCAACAGCACAGATGTGCACATCATCAATCTGTCGCTGACCTTCCACGGGCAGGAGCTGCTCAGCGACACCAGCCTGGAGCTGAACTCCGGCCGGCGCTACGGGCTCATCGGGCTCAACGGCACTGGAAAGTCTATGCTGCTGTCGGCGATTGGCCACCGTGAAGTACCGATCCCGGAGCACATTGATATCTACCACCTGACGCGCGAGATGGCGCCCAGCGAGAAGACAGCGCTGCAGTGCGTCATGGAGGTGGACGAGGAGAGGATCGCCCTGGAGAAAGAGGCAGAGCGGCTGGCTCATGAGGATGCGGAGTGCGAGAAGCTGATGGAGCTGTATGAGCGTTTGGAGGAGCTGGACGCCGACAAAGCTCAGGTGAGGGCCTCGCGAATCCTTCACGGTCTGGGCTTTACCCCAGCCATGCAGAGGAAGAAGCTGAAGGACTTCAGTGGAGGATGGAGAATGCGTGTGGCACTTGCCAGAGCACTATTTATTAAACCCTTCATGCTGTTGCTGGATGAGCCCACAAACCACCTGGACCTGGATGCCTGCGTGtggctggaggaggagctgtCTACGTTTAAGCGAATCCTGGTTCTCATATCCCACTCCCAGGACTTCCTCAATGGGGTCTGCACCAACATCATCCACCTGCATCAGAGGAAGCTCAAGTACTACACGGGTAACTACGATCAGTATGTGAAGACCAGGCTGGAACTGGAAGAAAATCAGATGAAACGTTACAACTGGGAGCAGGACCAGATCACACACATGAAGAACTACATTGCACGGTTTGGACACGGTTCTGCTAAGCTGGCTAGACAAGCGCAGAGTAAGGAGAAGACCTTACAGAAAATGGTGGCGTCTGGCTTGACTGAGCGCGTAGTGAGTGACAAGACCCTGTCATTCGTTTTTCCTCCCTGTGGGAAGATCCCTCCTCCGGTTATCATGGTTCAGAATGTTAGCTTTAAGTACTCGGACGACGGGcCTCATATCTACAAGAATTTGGAGTTTGGCATTGACTTGGATACCCGAGTGGCCCTGGTGGGCCCCAATGGTGCGGGAAAGTCAACGCTGCTGAAGCTGCTAACGGGAGAA

Function

GO: NA

KEGG:

id description
K06185 ABCF2; ATP-binding cassette, subfamily F, member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38995 lncRNA downstream 203571 2176162 ~ 2176966 (-) True G31137
TU38845 lncRNA downstream 318576 1975704 ~ 2061961 (-) True G31021
TU38926 lncRNA downstream 447123 1932341 ~ 1933414 (-) False G31082
TU38916 lncRNA downstream 484105 1885673 ~ 1896432 (-) False AMCG00019059
TU39093 lncRNA upstream 17265 2404414 ~ 2409880 (-) True G31218
TU39114 lncRNA upstream 87535 2474684 ~ 2474983 (-) True G31234
TU39116 lncRNA upstream 92789 2479938 ~ 2480415 (-) True G31236
TU39124 lncRNA upstream 106688 2493837 ~ 2494055 (-) True G31244
TU39125 lncRNA upstream 107567 2494716 ~ 2496567 (-) True G31245
AMCG00019079 mRNA downstream 22682 2342598 ~ 2357855 (-) True AMCG00019079
AMCG00019080 mRNA downstream 68137 2303870 ~ 2312400 (-) True AMCG00019080
AMCG00019078 mRNA downstream 81869 2291500 ~ 2298668 (-) True AMCG00019078
AMCG00019073 mRNA downstream 146020 2208790 ~ 2234517 (-) True AMCG00019073
AMCG00019074 mRNA downstream 176685 2191396 ~ 2203852 (-) True AMCG00019074
AMCG00019084 mRNA upstream 22791 2409940 ~ 2434075 (-) True AMCG00019084
AMCG00019085 mRNA upstream 84315 2471464 ~ 2484739 (-) True AMCG00019085
AMCG00019087 mRNA upstream 133764 2520913 ~ 2525129 (-) True AMCG00019087
AMCG00019092 mRNA upstream 251351 2638500 ~ 2657544 (-) True AMCG00019092
AMCG00019091 mRNA upstream 289166 2676315 ~ 2686173 (-) True AMCG00019091
TU38988 other downstream 201887 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 297266 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 297266 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 669994 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 1056941 1321614 ~ 1323596 (-) True AMCG00019034
TU39603 other upstream 2545689 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 11274967 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 12104742 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 12104742 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 12564693 14951842 ~ 14991996 (-) True G33259

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032517 True 2299 mRNA 0.46 14 NC_007113.7 32505557 ~ 32512648 (-)
grasscarp (Ctenopharyngodon idella) TU36123 False 1135 TUCP 0.34 8 CI01000004 12192130 ~ 12195147 (+)