RNA id: TCONS_00067994


Basic Information

Item Value
RNA id TCONS_00067994
length 445
RNA type mRNA
GC content 0.47
exon number 3
gene id XLOC_034960
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 39537790 ~ 39552314 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGTAGGCACCTGTGTGTGATCTTCAGAGACCGACACTTTGGAACAGATGCACTTGTTTACCTGTTTGAGGAGGTGATCCAGCGGAAGGAGAACTGTCAGAGAATAAAAACATAAAGCTGGTAAATCTACTTCAGTGATCTGGGTGATGATGGATCCTGCAGCAAAGCAGAAAGTGATTTACATCACCTACCTCATAGCGGCTCTGGAAATCACCTGGATGTTCCTCCAGTTCTCCATAACACCGTATTTGGCGAGGAGGCTCGGGTTCGACACTATTTGGTTCGGGTATCTGCAGACTACAGTCGGAGTGATTCAGCTGCTTGGAGGCCCCATTTATGGAAGtGAAAGGTTTGCAGCATCTTTTGGGGCTGTCGGGAGTTTTGTTTCTTTGATGTTGGTGTTGAACTTCATTcctaaacagacaaaaacacaaaccaCTCCGG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-051120-165 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in breast cancer. Orthologous to human SLC22A18 (solute carrier family 22 member 18).

Ensembl:

ensembl_id ENSDART00000173498

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067990 lncRNA downstream 102736 39437384 ~ 39441050 (-) True XLOC_034958
TCONS_00067989 lncRNA downstream 168025 39373539 ~ 39375761 (-) True XLOC_034957
TCONS_00067985 lncRNA downstream 183461 39280418 ~ 39360325 (-) False XLOC_034956
TCONS_00068689 lncRNA downstream 206932 39335172 ~ 39336854 (-) False XLOC_034956
TCONS_00067980 lncRNA downstream 563108 38978002 ~ 38980678 (-) True XLOC_034952
TCONS_00067997 lncRNA upstream 1845 39553758 ~ 39557294 (-) False XLOC_034961
TCONS_00067998 lncRNA upstream 1845 39553758 ~ 39560882 (-) True XLOC_034961
TCONS_00068002 lncRNA upstream 193321 39745234 ~ 39746022 (-) True XLOC_034964
TCONS_00068011 lncRNA upstream 989383 40541296 ~ 40561374 (-) False XLOC_034968
TCONS_00069276 lncRNA upstream 1005123 40557036 ~ 40561701 (-) True XLOC_034969
TCONS_00067991 mRNA downstream 6494 39463050 ~ 39537292 (-) False XLOC_034959
TCONS_00067992 mRNA downstream 72128 39463963 ~ 39471658 (-) True XLOC_034959
TCONS_00067988 mRNA downstream 164883 39373234 ~ 39378903 (-) False XLOC_034957
TCONS_00067984 mRNA downstream 183461 39255781 ~ 39360325 (-) False XLOC_034956
TCONS_00067996 mRNA upstream 1133 39553046 ~ 39611109 (-) False XLOC_034961
TCONS_00068000 mRNA upstream 178516 39730429 ~ 39738460 (-) True XLOC_034963
TCONS_00068001 mRNA upstream 192331 39744244 ~ 39751540 (-) False XLOC_034964
TCONS_00068003 mRNA upstream 506844 40058757 ~ 40082053 (-) False XLOC_034965
TCONS_00068004 mRNA upstream 518229 40070142 ~ 40082053 (-) True XLOC_034965
TCONS_00067983 other downstream 308674 39234995 ~ 39235112 (-) True XLOC_034955
TCONS_00067981 other downstream 407012 39136650 ~ 39136774 (-) True XLOC_034953
TCONS_00067973 other downstream 735961 38804123 ~ 38807825 (-) False XLOC_034950
TCONS_00067953 other downstream 899499 38642119 ~ 38644287 (-) False XLOC_034941
TCONS_00067949 other downstream 905497 38635643 ~ 38638289 (-) False XLOC_034940
TCONS_00067999 other upstream 163799 39715712 ~ 39716073 (-) True XLOC_034962
TCONS_00068010 other upstream 986657 40538570 ~ 40551054 (-) False XLOC_034968
TCONS_00068023 other upstream 1396962 40948875 ~ 40949190 (-) True XLOC_034975
TCONS_00068036 other upstream 1862677 41414590 ~ 41416307 (-) True XLOC_034982
TCONS_00068043 other upstream 1941104 41493017 ~ 41493131 (-) True XLOC_034985

Expression Profile

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