RNA id: TU27173


Basic Information

Item Value
RNA id TU27173
length 2502
RNA type TUCP
GC content 0.46
exon number 4
gene id AMCG00007173
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 6007640 ~ 6054064 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTCGTTCCCCTGCTGGTGGACAGGTCAGGGTCCCCTGTGGCCCCTCAGGGGTGCGGGCAGCAGTGTAACTGCTAGACGGTTATTGACGCCAATCACCAGCCCTCATTGCTGGGGAGGACGCATGGAGGTGGCAGGTTGACCCGGGGAAGGGAGGGGGATAGACTGTTCAAATTGGGAAATATGAAAccgattgtttttcttttcttttcaaatccactTTATCTCTCACTTATTCGACTCTGCCGATTCTCCTTTATTTGGTGTTATTTGCGGACTCGGTCTCGCCTCGCCGTTGGCTGTGAAGCGCTGTTTTGACCCCGTGGGTGCACTTGCTCTCTGTTCAATATTAATCCAAACCATTTCTCTTCCATGCTCTCTCCCCCTGCAAGGAGCGGAAGGTTTTCATAGAGCTGAATCACATAAAAAAGTGCAATACTGTCAAAGGAGTCTTTGTCCTGGAGGAATTTgTTCCTGAAACTAAAGAAGTGGTGATCCACAAGTACAAGACTCCGATGGCCCACCAGATCTGCTACTCCGTGCTGTGTCTCTTCTCCTACATGGCTGCGGTTCGAGGGAAGGAAGCCGAGAGCAAACCCAAAGCCCTGTCCCCGAGGCCGGTGCCCAGCTAGTCACGGCCCCTCGGCCCCGGGGGGGACCCTCACAACATACCGCTGTGCATGGCAGCGGGCTCCCCGTCCATCTCCCGTCCCGCCTACACGTCCTGCCCCGGTGCCCGTCCCTCGCTGGCTCGTGTTTTAGTGTACAGGAGAACAGTTCTGCTCTTTTgaagctatttatttaattttactccCCGTCGGCCCCTGTGTGGTCATTATTCGAGTTTGTTACGTATGTgtacgtgtctgtgtgtgtccgcCCTTCGCCATTCCCCCCTGGTTTTAACCTTCCCGCTATGCATTGGTTCTGTAAAGTGGGATTCCCGAATGTGTTGtacgtgtttgtttttaaccaaaATGAAAACGAAACATCTTGAACTGCAGCCTCCGCTCAGCAGCACGCCTCTTTCGGCATGTCGGTGTCCCGTTCGTTTTGTTTCGCCTCGTGCTCTTCCTGTCTTCTGCTCTCGACTGGAATTGCGACACTTGACAGCCGGCCGACTCCCGAACGCCACGGCTGCCGGCAGTGCGGCCGCCGGCAGTGCGGCAGCGACGACACTTTCTTGTACAGATCGTCTGTGTCACTGTGAATCCTGCAGCTCCTCCCTTACACTTCAGCTATacagtatgattattattacttacaTGTGCTTTATGATATTGTAAAGTCTGTTAAGTCTACCAtagtgaaacatttaaaaagcacaatgcGGGGAGTCGGCTCCAGGTACCGACGATGACACGACTGCCATCGTAGATACAGTTGACAGTTGATCTTAGAAATTAATAAAGGCATCGTTTTTTGtccattgtttgctttttaaatgtttcctggGGTTTCGATGTAGTGAGTGTTTAAGATGAATGCATTTTCTCTCGCTTTGCCTCCAGAGGCCTAACTACTGTACTGATGATGAAATTTGTGTCTGTGGTCGGCAGTATTGAAATGCAtgtacttcttcttcttcaaaagataataataataaaataaatgctgtacattttcttgGAGAAAGGAAACGCACTGTAtaattctgctgtttttttttattttttattattattattattattattatatgatggTTTGTCCACTAGTGGGTGGTAATCGGGTGGGATGCAGCCTGCCATGGGTTAAAGTAGAGAGAGGAAAgcgtaatatataaatacatataaatagatATTATTGTAATGAAAGACTGGGCAGCCACTGTTCAGACGACTGTTCCTATAAATGTGGACGCACTGTACTGAGAGACTCCTGCCTTCTAGGTCCTGctgtaatgtgtatattttaaaaggcgGAAAACAGTTTCTTTCTACgtcctgactttttttttttccagtgctgtgATACTGTTTCAGAGGTGTACAATGTCTGGGTGAACCATAGCAGTCacgttttctcttttttcttttgtgtctttctttcGTGAGGAAGGAAAAATACAGAATCATGTAATTAAAGTCAAGTACTTGCACATTGTAACTTCTTCCATTTGAATACTCCCCTAGACAGACCGTGTTGAGGCTGAAAATTAagtctaaatgtaaatattgtgtttaaaaacagatgGGATGGGGGGAGTAGATCTGTCGTACTGGGGAGGGAGGTGGTCGGCCCAGTGGACTGGATTAATTGGTACTGAAAACATACGTGGTTGTCTGATTCCAAGTATGCTgctctagagagagagagatatttaaaaaaaagacatctgatgtaaatatttcagtattaaaaagtatttatagaAATTGTACAGCTTTGGCAATATGAGAATAAAACACGTCCAACCTGAGATCTGTGAAGTGTGTGGTCTGTCACAATTAtaactgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27114 lncRNA downstream 19318 5915072 ~ 5988322 (-) True G21646
TU27012 lncRNA downstream 286098 5721263 ~ 5721542 (-) True G21582
TU26960 lncRNA downstream 445432 5559594 ~ 5562208 (-) True G21550
TU26942 lncRNA downstream 483963 5521615 ~ 5523677 (-) True G21536
TU26943 lncRNA downstream 488889 5517227 ~ 5518751 (-) True G21537
TU27225 lncRNA upstream 326610 6340779 ~ 6341171 (-) True G21722
TU27243 lncRNA upstream 504954 6519123 ~ 6519736 (-) True G21739
TU27263 lncRNA upstream 552048 6566217 ~ 6569739 (-) False G21756
TU27264 lncRNA upstream 552048 6566217 ~ 6569739 (-) True G21756
TU27299 lncRNA upstream 621414 6635583 ~ 6638309 (-) True G21786
AMCG00007170 mRNA downstream 111055 5872776 ~ 5896585 (-) True AMCG00007170
AMCG00007168 mRNA downstream 148373 5858851 ~ 5859267 (-) True AMCG00007168
AMCG00007167 mRNA downstream 165773 5826625 ~ 5841867 (-) True AMCG00007167
AMCG00007163 mRNA downstream 254669 5734674 ~ 5752971 (-) True AMCG00007163
AMCG00007162 mRNA downstream 314335 5692142 ~ 5693305 (-) True AMCG00007162
AMCG00007172 mRNA upstream 67366 6081535 ~ 6088041 (-) True AMCG00007172
AMCG00007176 mRNA upstream 107533 6121702 ~ 6122376 (-) True AMCG00007176
AMCG00007177 mRNA upstream 342841 6357010 ~ 6372398 (-) True AMCG00007177
AMCG00007185 mRNA upstream 641244 6655413 ~ 6660262 (-) True AMCG00007185
AMCG00007184 mRNA upstream 661497 6675666 ~ 6676981 (-) True AMCG00007184
TU27087 other downstream 187356 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 950234 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 958120 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 958801 5041659 ~ 5048839 (-) True G21426
TU26061 other downstream 3837070 2167310 ~ 2170570 (-) False AMCG00007059
TU27501 other upstream 1485278 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 2379027 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4173145 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 7337348 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 7931474 13945643 ~ 13946065 (-) True G22931

Expression Profile