RNA id: AMCG00007167


Basic Information

Item Value
RNA id AMCG00007167
length 543
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00007167
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5826625 ~ 5841867 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCCCAAGCGAGTTCACAACGCAGGATAAGGTGCCCTGCTCTGGTATGATCCAGAGGTGCACGCCAGTAAAGTACCATTACTCCTCCTCCACTCTTCCGCGGAACCTCCCCATCAACATCACCAAGACGATCCGTCAGGACGAGTGGCACGCGCTCCACTTGCGTCGCATGACAGCGGGCTTTATAGGAATGGCTGTGTCCATTATCCTCTTTGGCTGGATTATTGGCGTCCTCGGCTGCTGCAAGCAACACGATTTGATGCAGTACGTCGCCGGGCTGCTGTTTCTCATGGGAGGGACCTGCTGCATCATCTCCCTGTGCACCTGTGTGGCCGGCATCAACTTCGAACTATCCAGATACCCGCGCCACATGTACGGACTGCCCGAGGACATCAGCCACGGCTACGGCTGGTCCATGTTCTGTGCCTGGGGCGGGCTGGGCCTCACGCTGCTGGCTGGATTCCTGTGTACATTAGCCCCCTCGCTCAGCACCCCCCGCACAATGGTGCAAAAGCCGCGGCAGGAGAACGGCACCGTGTGA

Function

GO:

id name namespace
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27012 lncRNA downstream 105083 5721263 ~ 5721542 (-) True G21582
TU26960 lncRNA downstream 264417 5559594 ~ 5562208 (-) True G21550
TU26942 lncRNA downstream 302948 5521615 ~ 5523677 (-) True G21536
TU26943 lncRNA downstream 307874 5517227 ~ 5518751 (-) True G21537
TU26941 lncRNA downstream 310654 5514986 ~ 5515971 (-) True G21535
TU27114 lncRNA upstream 73205 5915072 ~ 5988322 (-) True G21646
TU27225 lncRNA upstream 498912 6340779 ~ 6341171 (-) True G21722
TU27243 lncRNA upstream 677256 6519123 ~ 6519736 (-) True G21739
TU27263 lncRNA upstream 724350 6566217 ~ 6569739 (-) False G21756
TU27264 lncRNA upstream 724350 6566217 ~ 6569739 (-) True G21756
AMCG00007163 mRNA downstream 73654 5734674 ~ 5752971 (-) True AMCG00007163
AMCG00007162 mRNA downstream 133320 5692142 ~ 5693305 (-) True AMCG00007162
AMCG00007157 mRNA downstream 149056 5674177 ~ 5677569 (-) True AMCG00007157
AMCG00007158 mRNA downstream 198253 5613748 ~ 5628372 (-) True AMCG00007158
AMCG00007156 mRNA downstream 220757 5592874 ~ 5605868 (-) True AMCG00007156
AMCG00007168 mRNA upstream 16984 5858851 ~ 5859267 (-) True AMCG00007168
AMCG00007170 mRNA upstream 30909 5872776 ~ 5896585 (-) True AMCG00007170
AMCG00007173 mRNA upstream 165862 6007729 ~ 6054064 (-) True AMCG00007173
AMCG00007172 mRNA upstream 239668 6081535 ~ 6088041 (-) True AMCG00007172
AMCG00007176 mRNA upstream 279835 6121702 ~ 6122376 (-) True AMCG00007176
TU27087 other downstream 6341 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 769219 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 777105 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 777786 5041659 ~ 5048839 (-) True G21426
TU26061 other downstream 3656055 2167310 ~ 2170570 (-) False AMCG00007059
TU27173 other upstream 165773 6007640 ~ 6014169 (-) False AMCG00007173
TU27501 other upstream 1657580 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 2551329 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4345447 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 7509650 13351517 ~ 13352073 (-) True G22838

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066210 True 8311 mRNA 0.39 4 NC_007118.7 32722227 ~ 32749591 (+)
grasscarp (Ctenopharyngodon idella) CI01000026_06698615_06712459.mRNA True 1666 mRNA 0.51 4 CI01000026 6698224 ~ 6712852 (+)