RNA id: AMCG00007172


Basic Information

Item Value
RNA id AMCG00007172
length 1311
RNA type mRNA
GC content 0.62
exon number 9
gene id AMCG00007172
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 6081535 ~ 6088041 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACGAGAGGAACATCGACTGTCTTCAGACTGGGATGCTGCGCTGgtggATAGGGTCCCCCCCCGGCCCCGACTACACCCCCCAGCACAACGGCACACCGCTGGGCCCTCAGGGTGTGGACAGTGACCCCGGCGGGCCCCTGTCCATGGACCCCTCCGACATCATGAAGTTCGATGTGGCGGCCGACGTGCTGGCGGCAAACTCCGGTATGTGCACCACCCCCCCGAGGAGCAGGAGACCTCGGACCCGGTCCAGAAAGTCGTCAGAAGAGTTGTTTTCAGAGCAGCAGCCGGTGAAGAGGAAGAAGGGCCCGGCGCCCAAGATGCTGGGCAACGAGGTGTGCAGCGTGTGCGGAGACAAGGCCTCGGGCTTCCACTACAACGTGCTGAGCTGCGAGGGCTGCAAGGGCTTCTTCCGCCGCAGCGTCATCAAGAGCGCGCAGTACGCCTGCAAGAACGGCAGCAAGTGCGAGATGGACATGTACATGCGCCGCAAGTGCCAGGAGTGCCGGCTGCGCAAGTGTAGGGAGGCAGGCATGCTGGAGCAGTGCGTACTGTCCGAGGAGCAGATCCGgctgaagaagatgaagaagcaGCACGAGGACGAGACGGCGCGCACCTCCGCCGCGCCCCCGGCCCCCCCGCTGGGAGTGGAGGCCCCCAGGCTGGAGCCGGAGCAGCTGGAGATGATCGAGAAGCTGGTGGCCATGCAGAAGCAGTGCAACAAACGCTCGTTCATTGACCGGCCCAAGGTCACGCCGTGGCCACAGAGTCAGGACCCGCTGAACCGGGAGGTGCGGCAGCAGCGCTTCGCCCACTTCACCGAGCTGGCCATCATGTCGGTGCAGGAGATCATCATGCTGCTTGAGACCTCCAGGAGATACAACCCCGCTATCGAGAGCATCACCTTCCTGAAGGACTTCAGTTACAACAAGGAGGACTTTGCGAAAGCAGGCCTGCAGTTCGAGTTCATCAACCCCATCTTCGAGTTCTCCAAGGGGATGAACGACCTGCACTTAGACGAGGCGGAGTACGCCCTCCTCATTGCCATCAATATCTTCTCCGCAGACCGCCCCAACGTCCAAGACCACGACCTCGTGGAGAGGCTGCAGCAGCCCTACGTGGACGCGCTTCATTCTTACATCAGAATCAAGAGGCCGCATGATCACCTGATGTTCCCCCGGATGCTGATGAAGCTGGTGAGCCTGCGTACCCTGAGCAGCGTGCACTCGGAGCAGGTCTTCGCCCTGCGGCTCCAGGACAAGAAGCTGCCGCCCCTCCTCTCCGAGATCTGGGACGTCCACGAGTGA

Function

GO: NA

KEGG:

id description
K08536 NR1H3, LXRA; liver X receptor alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27114 lncRNA downstream 93213 5915072 ~ 5988322 (-) True G21646
TU27012 lncRNA downstream 359993 5721263 ~ 5721542 (-) True G21582
TU26960 lncRNA downstream 519327 5559594 ~ 5562208 (-) True G21550
TU26942 lncRNA downstream 557858 5521615 ~ 5523677 (-) True G21536
TU26943 lncRNA downstream 562784 5517227 ~ 5518751 (-) True G21537
TU27225 lncRNA upstream 252738 6340779 ~ 6341171 (-) True G21722
TU27243 lncRNA upstream 431082 6519123 ~ 6519736 (-) True G21739
TU27263 lncRNA upstream 478176 6566217 ~ 6569739 (-) False G21756
TU27264 lncRNA upstream 478176 6566217 ~ 6569739 (-) True G21756
TU27299 lncRNA upstream 547542 6635583 ~ 6638309 (-) True G21786
AMCG00007173 mRNA downstream 27471 6007729 ~ 6054064 (-) True AMCG00007173
AMCG00007170 mRNA downstream 184950 5872776 ~ 5896585 (-) True AMCG00007170
AMCG00007168 mRNA downstream 222268 5858851 ~ 5859267 (-) True AMCG00007168
AMCG00007167 mRNA downstream 239668 5826625 ~ 5841867 (-) True AMCG00007167
AMCG00007163 mRNA downstream 328564 5734674 ~ 5752971 (-) True AMCG00007163
AMCG00007176 mRNA upstream 33661 6121702 ~ 6122376 (-) True AMCG00007176
AMCG00007177 mRNA upstream 268969 6357010 ~ 6372398 (-) True AMCG00007177
AMCG00007185 mRNA upstream 567372 6655413 ~ 6660262 (-) True AMCG00007185
AMCG00007184 mRNA upstream 587625 6675666 ~ 6676981 (-) True AMCG00007184
AMCG00007188 mRNA upstream 601539 6689580 ~ 6690200 (-) True AMCG00007188
TU27173 other downstream 67366 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 261251 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 1024129 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 1032015 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 1032696 5041659 ~ 5048839 (-) True G21426
TU27501 other upstream 1411406 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 2305155 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4099273 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 7263476 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 7857602 13945643 ~ 13946065 (-) True G22931

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00067869 True 2075 mRNA 0.44 8 NC_007118.7 34415765 ~ 34434889 (-)
grasscarp (Ctenopharyngodon idella) CI01000026_07853925_07863410.mRNA True 1666 mRNA 0.51 9 CI01000026 7853585 ~ 7863410 (-)