AMCG00007067 (eif3m,LOC107758039,LOC107671036)


Basic Information

Item Value
gene id AMCG00007067
gene name eif3m,LOC107758039,LOC107671036
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 2376136 ~ 2382023 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007067
ATGAGCGTCCCGGCTTTCATTGACATAACTGAGGAGGACCAGGCTTCAGAGCTGAGAGCCTACATTAAATCCAAAGGGGCTGAGATTTCAGAGGAGAACTCTGAAGGGGGTCTGCATGTGGATTTGGCCCAGATCATAGAAGCCTGTGATGTGTGTCTCAAGGACGATGACAAAGACGTGGAGAGTGTCATGAACAGCATTGTGTCTCTGCTGCTGATCCTGGAGACTGACAAGCAGGAAGCCTTGATCGAGAGTCTGTGCGAGAAGCTGGTGAAGTTTCGAGAGGGAGAGCGCCCTTCGCTCAGGATGCAGCTGCTGAGCAACCTCTTCCATGGCATGGATGAGAACACCCCTGTGAGATACACGGTGTACTGCGGTCTGATCCGAGTAGCCGCCACCTGCAACGCCATTGCCTTCATCCCCACTGAACTGGATCAGATCCGAAAATGGATAACGGACTGGAACCTTACAACTGAGAAGAAGCACACTCTTCTGAGACTTGTGTATGATGCGCTGGCGGACTGTAAAAAAAGTGACCATGCAGCCAAAGTCATGGTGGAGTTGCTGGGCAGCTACACTGACGACAATGCGTCACAAGCCAGGGACGACGCTCACAGGTGCATAGTGCGTGCTTTAAAAGACCCCAACACTTTCCTGTTTGATCACCTCTTGGCCCTGAAGCCGGTGCGGTTTTTGGAAGGAGAACTCATCCATGATCTGTTGACCATCTTTGTGAGTGCCAAGCTGGTAGCTTATGTGAAGTTTTACCAAAACAACAAGGACTTCATCGACTCTCTTGCTGTTAGAACCAAGATGGTCTATTGCAAAATTGACCAGACACAACAGAAGGTAGTTGTGAGTCACAGTACACACAGGACCTTTGGAAAGCAGCAGTGGCAGCAGCTGTACGACAGCCTCAACTCCTGGAAACAGAACCTGAACACAGTGAAAAACAGCCTCCTCAGCCTTTCCTCCACATCATAG

Function

symbol description
eif3m Predicted to enable translation initiation factor activity. Predicted to be involved in cytoplasmic translational initiation. Predicted to act upstream of or within translational initiation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Is expressed in exocrine pancreas and gut. Orthologous to human EIF3M (eukaryotic translation initiation factor 3 subunit M).

NR:

description
eukaryotic translation initiation factor 3 subunit M

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K15030 EIF3M; translation initiation factor 3 subunit M

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007067 True 984 mRNA 0.50 10 2376136 2382023

Neighbor

gene id symbol gene type direction distance location
AMCG00007066 NA coding downstream 12336 2350038 ~ 2363800 (-)
AMCG00007065 NA coding downstream 29435 2326612 ~ 2346701 (-)
AMCG00007063 NA coding downstream 65937 2302383 ~ 2310199 (-)
AMCG00007062 NA coding downstream 78255 2290403 ~ 2297881 (-)
AMCG00007057 hipk3,LOC105899775 coding downstream 131704 2238167 ~ 2244432 (-)
AMCG00007070 rcn1,LOC102786392 coding upstream 80131 2462154 ~ 2475341 (-)
AMCG00007071 NA coding upstream 215055 2597078 ~ 2629005 (-)
AMCG00007078 NA coding upstream 500345 2882368 ~ 2888415 (-)
AMCG00007081 csrp3,LOC107662347 coding upstream 522770 2904793 ~ 2908208 (-)
AMCG00007080 NA coding upstream 530406 2912429 ~ 2917189 (-)
G20908 NA non-coding downstream 68018 2200053 ~ 2308118 (-)
G20914 NA non-coding downstream 87518 2286824 ~ 2288618 (-)
G20870 NA non-coding downstream 203653 2171904 ~ 2172483 (-)
G20795 NA non-coding downstream 645657 1676304 ~ 1730479 (-)
G20802 NA non-coding downstream 648969 1722556 ~ 1727167 (-)
G20947 NA non-coding upstream 45136 2427159 ~ 2427421 (-)
G20965 NA non-coding upstream 165981 2548004 ~ 2548289 (-)
G20976 NA non-coding upstream 247074 2629097 ~ 2637796 (-)
G21020 NA non-coding upstream 520539 2902562 ~ 2903620 (-)
G21034 NA non-coding upstream 540637 2922660 ~ 2923027 (-)
AMCG00007059 NA other downstream 179281 2142675 ~ 2196855 (-)
G20630 NA other downstream 1423074 952236 ~ 953062 (-)
G20609 NA other downstream 1458307 845929 ~ 917829 (-)
AMCG00007001 NA other downstream 1962010 408839 ~ 414126 (-)
AMCG00006997 NA other downstream 2013842 356618 ~ 362294 (-)
AMCG00007072 NA other upstream 262882 2644905 ~ 2663649 (-)
AMCG00007091 ckap5,LOC108269026 other upstream 1094045 3476068 ~ 3500670 (-)
G21426 NA other upstream 2659636 5041659 ~ 5049520 (-)
G21429 NA other upstream 2674764 5056787 ~ 5057406 (-)
G21632 psmc3,prs6a,LOC107758446 other upstream 3434786 5816809 ~ 5820284 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location