RNA id: AMCG00007081


Basic Information

Item Value
RNA id AMCG00007081
length 576
RNA type mRNA
GC content 0.53
exon number 5
gene id AMCG00007081
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 2904793 ~ 2908208 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCAAACTGGGGAGGCGGTGCGAAGTGTGCGGCCTGCGAGAAGACTGTGTACCATGCAGAGGAGATACAGTGTAATGGAAGAAGTTTCCACAAAACCTGCTTCATCTGCATGACCTGCAGAAAGGGTCTCGACAGCACGACGGTAGCAGCCCATGAGTCGGAAATTTACTGCAAGTCATGCTACGGGAAGAAATACGGCCCTAAAGGTTACGGCTACGGGCAAGGAGCGGGGGCACTCAGCTCTGACCCCGGAGAGCACCTGGGGATTCAGCCACAAGAGTCAAAGCCTCATCGCCCAGCACCAGACTCAAACCCAAACAAATTTGCCCAAAAGTTTGGCGCGTCCGAGAGGTGTCCCCGGTGTTCAAAGGCAGTGTATGCTGCGGAGAAAGTCATGGGAGGAGGACAGCCCTGGCACAAGACGTGTTTCCGTTGCGCCTTCTGTGGGAAGAGTCTCGATTCTGCAACAGTCACTGACAAAGACGGAGAGATCTACTGCAAAGTTTGTTATGCCAAAAACTTTGGTCCAAAAGGAATGGGGATGGGAAATCTGGGAGTGGTtgaagaaaaatag

Function

GO:

id name namespace
GO:0045214 sarcomere organization biological_process
GO:0060047 heart contraction biological_process
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09377 CSRP; cysteine and glycine-rich protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26258 lncRNA downstream 1173 2902562 ~ 2903620 (-) True G21020
TU26204 lncRNA downstream 241144 2644905 ~ 2663649 (-) True AMCG00007072
TU26198 lncRNA downstream 266997 2629097 ~ 2637796 (-) True G20976
TU26186 lncRNA downstream 356504 2548004 ~ 2548289 (-) True G20965
TU26162 lncRNA downstream 477372 2427159 ~ 2427421 (-) True G20947
TU26285 lncRNA upstream 14452 2922660 ~ 2923027 (-) True G21034
TU26287 lncRNA upstream 98190 3006398 ~ 3010255 (-) True G21036
TU26340 lncRNA upstream 499946 3408154 ~ 3408708 (-) True G21082
TU26358 lncRNA upstream 567869 3476077 ~ 3476799 (-) False AMCG00007091
TU26383 lncRNA upstream 593675 3501883 ~ 3502845 (-) True G21122
AMCG00007078 mRNA downstream 16378 2882368 ~ 2888415 (-) True AMCG00007078
AMCG00007072 mRNA downstream 241422 2644955 ~ 2663371 (-) False AMCG00007072
AMCG00007071 mRNA downstream 275788 2597078 ~ 2629005 (-) True AMCG00007071
AMCG00007070 mRNA downstream 429452 2462154 ~ 2475341 (-) True AMCG00007070
AMCG00007067 mRNA downstream 522770 2376136 ~ 2382023 (-) True AMCG00007067
AMCG00007080 mRNA upstream 4221 2912429 ~ 2917189 (-) True AMCG00007080
AMCG00007085 mRNA upstream 220571 3128779 ~ 3131839 (-) True AMCG00007085
AMCG00007091 mRNA upstream 567860 3476068 ~ 3500670 (-) True AMCG00007091
AMCG00007094 mRNA upstream 595641 3503849 ~ 3538983 (-) True AMCG00007094
AMCG00007093 mRNA upstream 747162 3655370 ~ 3680401 (-) True AMCG00007093
TU26061 other downstream 734223 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 758978 2144716 ~ 2145815 (-) False AMCG00007059
TU25725 other downstream 1951731 952236 ~ 953062 (-) True G20630
TU25699 other downstream 2056504 845929 ~ 848289 (-) False G20609
TU26783 other upstream 2133451 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 2134312 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 2148579 5056787 ~ 5057406 (-) True G21429
TU27087 other upstream 2908601 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 3099432 6007640 ~ 6014169 (-) False AMCG00007173

Expression Profile