RNA id: TU26287


Basic Information

Item Value
RNA id TU26287
length 242
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G21036
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 3006398 ~ 3010255 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGTATCGAGCTGGAACAGGATTATACACACTGGGGAGGATCGCTTCAAACCAGTTGTCGATCACTTTCATTTAACTCAACGctccAGTCATGACACACATTCGCTCTTCCTTTGCCATCTCCCCTCGTCCCCGTCAGCCTGGCTCACTGCAGACGGACCAGATCAAGTGACTGCAGCTGACAGGGACTCCACACCATCCTCCTACAGTCCTATGTCTTCGGTATTAAACATCCAACCTGC

Function

GO: NA

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26285 lncRNA downstream 83371 2922660 ~ 2923027 (-) True G21034
TU26258 lncRNA downstream 102778 2902562 ~ 2903620 (-) True G21020
TU26204 lncRNA downstream 342749 2644905 ~ 2663649 (-) True AMCG00007072
TU26198 lncRNA downstream 368602 2629097 ~ 2637796 (-) True G20976
TU26186 lncRNA downstream 458109 2548004 ~ 2548289 (-) True G20965
TU26340 lncRNA upstream 397899 3408154 ~ 3408708 (-) True G21082
TU26358 lncRNA upstream 465822 3476077 ~ 3476799 (-) False AMCG00007091
TU26383 lncRNA upstream 491628 3501883 ~ 3502845 (-) True G21122
TU26560 lncRNA upstream 1269061 4279316 ~ 4279569 (-) True G21249
TU26603 lncRNA upstream 1347458 4357713 ~ 4373125 (-) True G21286
AMCG00007080 mRNA downstream 89209 2912429 ~ 2917189 (-) True AMCG00007080
AMCG00007081 mRNA downstream 98190 2904793 ~ 2908208 (-) True AMCG00007081
AMCG00007078 mRNA downstream 117983 2882368 ~ 2888415 (-) True AMCG00007078
AMCG00007072 mRNA downstream 343027 2644955 ~ 2663371 (-) False AMCG00007072
AMCG00007071 mRNA downstream 377393 2597078 ~ 2629005 (-) True AMCG00007071
AMCG00007085 mRNA upstream 118524 3128779 ~ 3131839 (-) True AMCG00007085
AMCG00007091 mRNA upstream 465813 3476068 ~ 3500670 (-) True AMCG00007091
AMCG00007094 mRNA upstream 493594 3503849 ~ 3538983 (-) True AMCG00007094
AMCG00007093 mRNA upstream 645115 3655370 ~ 3680401 (-) True AMCG00007093
AMCG00007097 mRNA upstream 695149 3705404 ~ 3717619 (-) True AMCG00007097
TU26061 other downstream 835828 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 860583 2144716 ~ 2145815 (-) False AMCG00007059
TU25725 other downstream 2053336 952236 ~ 953062 (-) True G20630
TU25699 other downstream 2158109 845929 ~ 848289 (-) False G20609
TU26783 other upstream 2031404 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 2032265 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 2046532 5056787 ~ 5057406 (-) True G21429
TU27087 other upstream 2806554 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 2997385 6007640 ~ 6014169 (-) False AMCG00007173

Expression Profile