RNA id: TU25699


Basic Information

Item Value
RNA id TU25699
length 978
RNA type TUCP
GC content 0.47
exon number 4
gene id G20609
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 845929 ~ 917829 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGTGTTAATGACCGTCCATTGTAATGGCAAACACAATGAGATGTTGTACTGGGAGGAGCAGACGTGGTCACTGTTGAAACTGATGTAGATGCACTTGTAGAGCTCATACTCGTACTTGCGATTATTTCTGAGGTTGTGGTTCTTTTAGGAGGTGTGGTAACAGACGATGTTGAGGATGCTGGAGTAGTAGTGGTTATTTCTGTACTCCCAGTTGTTGTTGAAGGGGTTGTGGTGCTTGGAGGGTGTGTTGATAGTGTTGTGGtttccttttcctgtttttccgTTGTTTTCTGAGGTGTTGGCTTAGGTGTTGAGCCTGTAATTACCTCTGGTGTTGTACTGCCTGTTGTTGAGGTACCAGTTGTGGGTGTTGTAGGTCCCATTGTGCTCTCAATTGTGGGGGTTGTGGTTTCTGTACTGACAGTTGTTGTTGAAGTGGTTGTTGGGGGCACAGTGGTGGTGGGTGTGGGTGGTTCTGTTGATTGAGTAGTTGCAGTCTTTTCTGGAGTAGATAGTTTGGAGGTTGTGCTCTCAGTTGATGTAGGTGTAGTTGATTCAGTGGATGGTGTGGTCTCTGTAGTAGTGGAAGGTCCAGTTGTGGTCTCTATGGTGGTTGTTGAGGTACCAGTTGTGGCTGTTGTAGGGCCTGTTGTTCTCTCAGTTGATGTAAGTGTAGTTGATTCAGTGGATTGTGTGGTCTGTGTAGTAGTGGATGGTCCAGTTGTGGTCTCTATGGTGGTTGTTGAGGTACCAGTTGTGGGTGTTGTGGGTCCTGTTGTGCTCTCAGTTGATGTAGGTGTAGTTGATTCAGTGGATTGTGTGGTCTGTGTAGTAGTGGATGGTCCAGTTGTGGTCTCTATGGTGGTTGTTGAGGTACCAGTTCTGGGTGTTGTGGGTCCTGTTGTGCTCTCAGTTGATGTACGTGTAGTTGATTCAGTGGATTGTGTGGTCTCTCTCGTAGTGGAAGGTCCAGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25689 lncRNA downstream 16405 829097 ~ 829524 (-) True G20607
TU25686 lncRNA downstream 22165 818975 ~ 823764 (-) True G20604
TU25537 lncRNA downstream 250159 595477 ~ 595770 (-) True G20510
TU25534 lncRNA downstream 257327 588325 ~ 588602 (-) True G20507
TU25527 lncRNA downstream 299428 546056 ~ 546501 (-) True G20501
TU25705 lncRNA upstream 54630 902919 ~ 903735 (-) True G20612
TU25707 lncRNA upstream 58307 906596 ~ 936502 (-) True G20614
TU25710 lncRNA upstream 65841 914130 ~ 920107 (-) True G20617
TU25778 lncRNA upstream 142266 990555 ~ 991999 (-) True G20676
TU25839 lncRNA upstream 530167 1378456 ~ 1381110 (-) True G20726
AMCG00007015 mRNA downstream 120968 724461 ~ 724961 (-) True AMCG00007015
AMCG00007006 mRNA downstream 175064 669164 ~ 670865 (-) True AMCG00007006
AMCG00007011 mRNA downstream 187016 654866 ~ 658913 (-) True AMCG00007011
AMCG00007005 mRNA downstream 205977 628775 ~ 639952 (-) True AMCG00007005
AMCG00007007 mRNA downstream 263364 570135 ~ 582565 (-) True AMCG00007007
AMCG00007031 mRNA upstream 49975 898264 ~ 900488 (-) True AMCG00007031
AMCG00007030 mRNA upstream 117217 965506 ~ 973794 (-) True AMCG00007030
AMCG00007032 mRNA upstream 246456 1094745 ~ 1113487 (-) True AMCG00007032
AMCG00007036 mRNA upstream 338352 1186641 ~ 1208036 (-) True AMCG00007036
AMCG00007035 mRNA upstream 417302 1265591 ~ 1285027 (-) True AMCG00007035
TU25476 other downstream 431803 408839 ~ 414126 (-) True AMCG00007001
TU25464 other downstream 483855 360693 ~ 362074 (-) False AMCG00006997
TU25387 other downstream 585693 259583 ~ 260236 (-) True G20397
TU25378 other downstream 613435 230324 ~ 232494 (-) True G20388
TU25725 other upstream 103947 952236 ~ 953062 (-) True G20630
TU26054 other upstream 1296427 2144716 ~ 2145815 (-) False AMCG00007059
TU26061 other upstream 1319021 2167310 ~ 2170570 (-) False AMCG00007059
TU26783 other upstream 4193370 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 4194231 5042520 ~ 5049520 (-) False G21426

Expression Profile