RNA id: AMCG00007007


Basic Information

Item Value
RNA id AMCG00007007
length 2568
RNA type mRNA
GC content 0.61
exon number 17
gene id AMCG00007007
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 570135 ~ 582565 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCTGCCTCCAAGTAATCCTCTTACAGCGCACCTCCAGGAGGAGCAGAGAGATCCTGTATCCCGTGGAGTCACTCAGGAGGGAGTTCAGAGCTGAGCTGTTAAGCCAACAGgcactgggctgggctgggctgggggtcCTCACCTGTCCTGATGCATGTAGCCCCCACAAGCACACTGAGCTCCAGGGAACAGCGATGCTGATCTATCCAGAAGGTCTGCCAACCATCCCCTCCATTGTCACTGTGAACCAGGCCTCCCTGCTCCCTCAGCGTACCACCGTCCAGACTGTGTCCTctcaTCCGCGGCGCGTGTGCAGTACCTGGGGGGCGCAGCACTACCGCATGTTTGACGGGGAGTTGTTCCAGTTCCCGGGCTCCTGTAACTACGTGCTGGCCTCTCACTGCCGCGCTGCCTATGAGGACTTCAACATCCAGCTGCGCCGCAGCGCCGCCGCCATCCGCCTCGTCACCGCCAAGCTGGACGGCACCGTGCTGGAGCTGCGCCAGGACGGCGTCCTGGTCAACGGGCAGCTCCCAGCCTTCGTCTCCTGCGCAGGACTGGTGTCTGTGGCTGCGTTAGCGCAGGCCTGCGAGCAggatgtgtgtgagtgtgtgcaggaAAGCCGCGCCCAGTGCCTGTGCAGCACCGTGGCCGAGTACTCCCGGCAGTGCACTCGCGCTGGGGGACGGCCCCAGAACTGGAGGACCCCCGACTTCTGCCAGAAGACATGCCCGCGCAGCCTGGTGTACAGTGAGTGTGGCAGCCCCTGCATCAACACTTGCTCCAACCCAGTCAGCTCACAGCTGTGCAAAGCTCGCTGCACCGACGGCTGCTTCTGCCCCCCAGGCACTGTGCTGGACGACATCACGGATAAGGGCTGTGTGCCGCTGCTGAAGTGCCCCTGCTCCCACAACGGCACAGCCTTCTCCCCAGGCCAGTCCCACTCTGGCGAATGCCGCATCTGCACCTGCGCTGGAGGCCAGTGGAGCTGCCAAGAGCTGGACTGCCCGGGGACCTGCTCTGATTGCTATGGCAACCAGTTCACCGTCGCAGCCGAGATCATGAGATGTGggctgacagagacagagacttgCCTGAAATCCATCACCCTGTCCATCGCCCAGAAAAACACGGTGAGGCCCGAGAGTCAGGCCACCTTCTGTGCGGGGACAGAGACATTACATATCTCACTTATCTCATTATTACAATTGTTAATTGAGGGACTCCATGCTGTGGCGGGTCTGGAGTGTGTGACCCTTGTGTCTGTGCCCCTGCAGGTCATTGCCCTCAGTGCCAGTGGTTCAGTGCAAGTCAATGGCATCGCAGCTCAGCTCCCTCTGAGCACCAATAACTTCACCATCTTCAGCCCATCCTCCTTCTACACGGTGGTCCACACCTCGTTCGGGCTGCAGCTGCAGGTCCAGCTGTCTCCACTCATGCAGCTGTACGTGACGGCTGACCCCATGTACAAGGGCCACACCTGCGGTCTCTGTGGGGATTTCAATGACGTCCAGATTGACGATTTCAAGGCCCAGGGGGGGGTAGTGGAGGGAACAGCCGCAGCCTTCGCCAACACCTGGAAGAGCAGAGCCAGCTGCCCGGATGTGATGGACAGCCTGCAGAACCCCTGCAGCCTCAGTGCGGAGAATGAGCAATTCGCCAAGCACTGGTGCTCCCTGCTGTCCAGCCCCACAGGGCCCTTCGCTGGCTGCCACGCCACCATCCCGCCTCCGGCCTACGAAGTGAACTGCCTGTACGACAGCTGCAACTGTGAGAAGAGCGAGGACTGCATGTGCGCTGCCGTCTCCTCCTATGTCCATGCCTGCGCTGCGAAGGGTGTCACACTGGACGGCTGGAGATCCAGTATCTGCACCAAATACTCCAGCAGCTGCCCAAAGACCCTGGTCTATGGGTACAGCATGACCAGCTGCCAGCGCACCTGCCGCTCCCTCAGCGAGGCGGACCACACCTGCCAGGTCCAGTTCGTGCCTGTGGATGGCTGTGGCTGTGCCGAGGGGACCTACATGGATGAGGAGGGCAAGTGCGTCCTGCCTAGCCAGTGCTCGTGCTACAGTGAGGGGGCGGCGGTGCCAGCCGGGGAGACAGTCACCAGGAACGGGGTGCTGTGcAAATGCAACAAAGGAAGATTGGCTTGTCTGGGGACCATTTCACAGAAACCAGTGTGTAAGAAGCCCATGTCCTTCCTGGACTGCTCCAAGGTGCAGCCAGGCTCCCCTGGGTCTGAGTGCCAGAAGAGCTGCCAGACTCTAGACACCGACTcgCTGTTCTGTGATTTCTACAACCCTCCTGGTGAGTGTGAGTGGCACTACCAGCCCTGTGGATCTCCCTGCATGAAGACCTGCCGGAACCCCGCGGGGAAATGCTCCAATCAGATCCCAGGACTGGAAGGCTGCTACCCCAAGTGTCCTCCCAAGAAGCCCTTCTTCGACGAGGACGCCATGCGCTGTGTGGCCAGGAGGCAGTGCGGTTGTTTCGATGCCAACGGGAAACGCTATGGCAATGGAGAGAAGGTGCCATCCACCAAGAACTGCGAGTCCTGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25527 lncRNA downstream 23634 546056 ~ 546501 (-) True G20501
TU25486 lncRNA downstream 145357 423334 ~ 424778 (-) True G20465
TU25456 lncRNA downstream 216664 346274 ~ 353471 (-) True G20446
TU25423 lncRNA downstream 253021 310713 ~ 317114 (-) False G20423
TU25534 lncRNA upstream 5760 588325 ~ 588602 (-) True G20507
TU25537 lncRNA upstream 12912 595477 ~ 595770 (-) True G20510
TU25686 lncRNA upstream 236410 818975 ~ 823764 (-) True G20604
TU25689 lncRNA upstream 246532 829097 ~ 829524 (-) True G20607
TU25693 lncRNA upstream 263364 845929 ~ 917829 (-) False G20609
AMCG00007008 mRNA downstream 1612 566445 ~ 568523 (-) True AMCG00007008
AMCG00007010 mRNA downstream 4361 555074 ~ 565774 (-) True AMCG00007010
AMCG00007009 mRNA downstream 15981 553315 ~ 554154 (-) True AMCG00007009
AMCG00007004 mRNA downstream 60386 488655 ~ 509749 (-) True AMCG00007004
AMCG00007003 mRNA downstream 91863 473858 ~ 478272 (-) True AMCG00007003
AMCG00007005 mRNA upstream 46210 628775 ~ 639952 (-) True AMCG00007005
AMCG00007011 mRNA upstream 72301 654866 ~ 658913 (-) True AMCG00007011
AMCG00007006 mRNA upstream 86599 669164 ~ 670865 (-) True AMCG00007006
AMCG00007015 mRNA upstream 141896 724461 ~ 724961 (-) True AMCG00007015
AMCG00007031 mRNA upstream 315699 898264 ~ 900488 (-) True AMCG00007031
TU25476 other downstream 156009 408839 ~ 414126 (-) True AMCG00007001
TU25464 other downstream 208061 360693 ~ 362074 (-) False AMCG00006997
TU25387 other downstream 309899 259583 ~ 260236 (-) True G20397
TU25378 other downstream 337641 230324 ~ 232494 (-) True G20388
TU25694 other upstream 263364 845929 ~ 848289 (-) True G20609
TU25695 other upstream 263364 845929 ~ 848289 (-) False G20609
TU25696 other upstream 263364 845929 ~ 848289 (-) False G20609
TU25697 other upstream 263364 845929 ~ 848289 (-) False G20609
TU25698 other upstream 263364 845929 ~ 848289 (-) False G20609

Expression Profile