RNA id: TU25778


Basic Information

Item Value
RNA id TU25778
length 845
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G20676
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 990555 ~ 991999 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTTATTTTGCCTCCCGCTGCCTTATGCTAATCTCTAACACTGTTAGAAATTATGCAGACACAAGAAATTTAAAAGTAACTGTTGCTAAAGGCATTCATAAGCAGTGTGAAGAGGATTGATTTTTAtcttttgcaaattaaattatactttcGTCTTTGGTAATTCTATTTTTAAGCACGTCATGTTCCAGGTAATTACAACAGGTAATAAATTACTCCAGCCTGAAACAGCTTGTGTTTATTATGTAAGATAAGGCCATGACATCCTAGCCAGAGGCAGCACTGAAATGAAATCAGTTTAATCAGTGAGGTCTATGGATTATCTTTTCAACATTAGACCTTGCTTGACActctgtaaaacatgtttttttctaaagacttttcatttcttttcagTTGGAACAGATTCCCTATAGAGCTGTTTGGGCTGTAAAAAAATCCATCATGCTTTCTTCAGTGCAAagatgcaaaaaaaatgtaaaccgtTTTCAGAATCTTTGTGCTGGAACTCAGGAGTTCACGAAAATTACTATTGTGTGTTCACATTCAGGTAAATGAGGAAAGGACAATTTCTCACTGTGGCTCACAGTGACTGGATCAGATTTCACTCCCACATCATTCTTGTCAACATAGGAGCTGAAGTAGTTGTGAGATGttacacaatgtaaaatatatatttttatgtcaaTAACATAAGTGTGttatgtacatattgtaaagtgtggATTACTTCCTAACTAACCAAATAACGTTGTAGCAACATTGCATTGAAGTGAACACAGAACAATCCAGTGTGGTGGCAATGTGAATTGAATGTtatcaaaacattgtaaaataaagagaga

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006518 peptide metabolic process biological_process

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25707 lncRNA downstream 54053 906596 ~ 936502 (-) True G20614
TU25710 lncRNA downstream 70448 914130 ~ 920107 (-) True G20617
TU25693 lncRNA downstream 72726 845929 ~ 917829 (-) False G20609
TU25705 lncRNA downstream 86820 902919 ~ 903735 (-) True G20612
TU25700 lncRNA downstream 142266 845929 ~ 848289 (-) False G20609
TU25839 lncRNA upstream 386457 1378456 ~ 1381110 (-) True G20726
TU25840 lncRNA upstream 388511 1380510 ~ 1381110 (-) False G20726
TU25945 lncRNA upstream 684305 1676304 ~ 1730479 (-) True G20795
TU25954 lncRNA upstream 730557 1722556 ~ 1727167 (-) True G20802
TU26063 lncRNA upstream 1179905 2171904 ~ 2172483 (-) True G20870
AMCG00007030 mRNA downstream 16761 965506 ~ 973794 (-) True AMCG00007030
AMCG00007031 mRNA downstream 90067 898264 ~ 900488 (-) True AMCG00007031
AMCG00007015 mRNA downstream 265594 724461 ~ 724961 (-) True AMCG00007015
AMCG00007006 mRNA downstream 319690 669164 ~ 670865 (-) True AMCG00007006
AMCG00007011 mRNA downstream 331642 654866 ~ 658913 (-) True AMCG00007011
AMCG00007032 mRNA upstream 102746 1094745 ~ 1113487 (-) True AMCG00007032
AMCG00007036 mRNA upstream 194642 1186641 ~ 1208036 (-) True AMCG00007036
AMCG00007035 mRNA upstream 273592 1265591 ~ 1285027 (-) True AMCG00007035
AMCG00007037 mRNA upstream 385965 1377964 ~ 1383579 (-) True AMCG00007037
AMCG00007041 mRNA upstream 402357 1394356 ~ 1411242 (-) True AMCG00007041
TU25725 other downstream 37493 952236 ~ 953062 (-) True G20630
TU25696 other downstream 142266 845929 ~ 848289 (-) False G20609
TU26054 other upstream 1152717 2144716 ~ 2145815 (-) False AMCG00007059
TU26061 other upstream 1175311 2167310 ~ 2170570 (-) False AMCG00007059
TU26783 other upstream 4049660 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 4050521 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 4064788 5056787 ~ 5057406 (-) True G21429

Expression Profile