RNA id: TU44033


Basic Information

Item Value
RNA id TU44033
length 4721
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G33168
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 40920334 ~ 40925054 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcctgttttttttattttgtcaaacatttttattgaaGCATTCATTTTACATGTAAGAAATACTCAAAACATTTCAAAGAGTCAACGTGAGCCAGACTACTGAAAACGAGACATGGGTCAAAATGCTATTCTTTTAGTTATTTTTCCGTCACGGTTAGATTTGTGCTTTTCAGAAATACACAACTGCTTATTTTGGAAGAATTTTCAACCACATTTTGACTCATGTCTTCTCGACATAGTTTCTAATACACGATGATGAATCTTCCATCAGtattatcagaaaaaaaaagcacagaccAGAAACATCCAACATATTGTCAATTACTGTACAGTGAATTCACTTGATAAAAATACACAGTTAACAGGCGTCTTCGACGGGGCCCGTGAATCTGCTCAGCAGTCACGAGAAAgtatcttttacattttttgattttttcaGTTACATGCATGCATCACACAAGAGCTTCAGATGGGTTATGCTCAAGTCACTTCACACACCACGAGTTCTGATCATGACTTGGAACTGGGTCAGGTCTGCCTTTTAAAGTAAAACTGAAGCAATCATAGGTCCACCTCTGCACACTGAACTCTCACTGAGGCTGAAATAGAGAAACCACCACGGGTCAGACTGTGACAGAATACATTATTATCTGAAATGAGGCAAACTCACAGTATAATTTCTTACTGTGAAAAAGAAATTGGCATATCATCGTCCAAAATTGTCACTTTCTTAGAAGTCAGTGCAGCCATACAGGACCGGAAATTGTCGATTAGTAACGGTGTAGAGTGAAGCGAGGCCTGGGGAGAGTGTGAAGTCTTATTAGTTTTCAGAGGAGGTGTGAAGCCACTTTCCCCAGTGCAAAAGAGATGTGACTCGGTGAACAGTTTTATGACATGGAAGAAAATTCAGATTTTTACCACTCTGACTGCACATTGTGGTCACACCTTCAGATTTATCTTGATAAAGACGGAGCGCATCGCGTTGTACTCTCAAAGCCACGTCCACCGGAGGGGGAAAACAATCAATGCCACAAAATGCAGCTAATGGAAACGCTAACAAAGTGCCTGTAGCTAGCAAAAAACATTAGATTTAAGCATGTCGCAGGATTATTTTAGCAACCTTTGTCTACCAGAGAGGACAAGTTAGCTGttagtaagctaatgttagctatgtgttagcaaaTTAAGGCAAACATAATGCTGCATAGCTTTCTGATTTATCCACATTCCACTGTAACACGAGTCGCACACTGTCAAAATGTTTTAGCTTAACATACATAACtatagttagcctaaaactgacatttggatatcTGACTTGGTAACAAAATGCTTGCTTCATAGTAACGCTGgccgtaacgttagcttagtgtcTTCCCATTCTCCCTGCCGATTCCTCACGTCACTTTTGTCTTTATAAAAACTCAGTTTTTCGGTTCGGCAGCTTAAGTTTTGGGTTCTTTACCCTGTTGGTAGTGCatatcaccacacagcagcttttaagcatttttctgttgtttgctagcagacggCGATGACGAGGAGGCACCGTCACGTaatacaagtcaatggagagcggAGAGTTGATTTCCCCTCcggtgggggcgggacttaaatgcgctctgtctctatggtgtttttatttgaGATATTTCATAGTAAATATAGCAATATACCTTCATTTTAATGTTGCGCTTTGTTGAAGTGCACTGGTCTGAATGCTTGTCTGCTAAatactccactatgttcaccagccaGTCTCTAGCTATGTCTGTCATTTGGTGATTTGGTCATTGTTTTGACTGGAAAGTTGATGCGGTGAGACTTTGGTCTATTGTTGACAGAAAAATATTAATAAGTGTATCTTTTAAATGTCGTTTTTCAATGCCTTGAGCACCGAACACAATactctttttactttttattgtattgagtTGGCAGCAGAAATCGATTTAAATTCACGAAACTGCAGTTAGTGCTCTCCCTTGCTGAGTTAAaacttcttttttatatattcttttGAAACTTAAATTTTCATTAGGTAAAATGGTCTGGTGTGTTCAGACCATAGTTTATAAGACAACTTCTCAGAAATTCCCCTCCACTTAActgttattaaaaacaaaaaaaagtaaacgtTCAATCACAGCAAAGTATCACTCCACATGGTGCCTCTCCAACAGAGAAGGAGATTTCATAAAGTCAAGGTTCATTACAGTTTGAACAGCATCATCTTTCCCCCGGCAGCGTGAAATTCAACAGACATGCATATTACAGTGGCCTGGGAGAAGCTGTTCAATTTTCCCCACAGTGGTCGCCATCTGAAGAAATGAATTAAACTGCTGCTAGAATTAGAAATCAAATTATGGTCCAGATCCCCGCAGGCCCAGAGGTAGCATGTGGTCAACAGTTGGTACGGGATGGATATGCAGTCTTTTCCTAAACTGTTTCGTCCTGTTGCCCTCTGCTACCGCTGTGGCTGAGTATCTGAGCGAGAAAcactccaaaataaaaaaagagagactcattttgacacaaaacgCACTGTTCATACCAGTTTAACATGCCTCTAAAGACATAAAGAAAGTAAAGTGACTTTTTACATACGAGCAGAAACATTCAGTCTTTGACGAGGATAAGGAATATTTCACTTCAGAATAAAAACTGTGACCTCCTCTCCTTCATGTACAGCATGTAGGATGAGCATACCCCTCTGCTGCTAATTCAATTATAGTTTAAAAAGAGCATACAATGTCCATCAAATTAATTTAATCACCATATTCTTTGAGCCTGATAATCGGACTAAATTGCCatttatggcgtttttccattacatggtacctgctcggctcggctcggctcgaccgcggtgccccgtcctcctttttccattgcagatttttagtaccgcctcatgtgTGAGGCGAGCgcggctggtcgtcatagcgccGCCAGAGGAAACTgtcgtgacctaacgcgacacacgaAGGTGTGTcgctgttgccacagccagaagacccattttgtttcaaaagaagctggaggcagcaaaaaaacaccgctggctaaactgtTTAAAAAAGGTGGGTTTGCTCACTACACCCTcttctgtcgctagcaatgatgacgcagtgattagtgacgattctctcccaccaatcagtagtctgcaggttttcacatcACCTTCTGCTAttgcctcagctcgcttggaacctcgacggaggtgatcctaaaaaaagtacctgttggcaggtaccagggacttttttttttcataatggaaaaccaaaaaaggcgagtagaggcgaggcgagtcgagcaggtaccatgtaatggaaaaaatgGTTTAAATAGTAAATTTAATTAGTTTTCATCTTAAGGGAGATGCTGGAGCTAACTTTCTTCCTCCAGAGAATGTGTCAACTTTTGAACCCACttttaatcatttaaatattaaaaatagtTAAATCACAAAGTACTAAGAGTGGACACAGGATAGTTCTGCTATGAATTTCAATGACATGGAAGTACGATACTTCTAACTTAAACGAGAGTTCGGATGGTAATGACTTGAGTTTCCATTATAGAGTGAAATTTTCAATTAGAGTTCACATTGCCATTCAAGGTTCCATTAGCTGGAAATTGAAGATATTTTCATTTAAGCTCTACGCTCAGTCCAAGGTCCCTGTGACTTTTGCGAAAGGAATTCATATGACGAGGAAGCGTCATAGACGACCACAAGTATTCTCCACTCTGCACACAACCCACAAACCTTTTGTGAACGGAGACTTGATCCACTCATGCATGAATTCCTCTCACAACGTTCAGTCCCTAGCTCATGTGCTGCAGCTAGGGTTTCTTCTCTGcatgtgattggctgctgctgctgctgctgctgctgctgctgctgctgctggtggtggtggtggtggtgttggggAAGTCCTGATAAACCAGGAAGCCAGTGAAGGTGATGTACTTGGCGTGGTTGCTGTAGGCCCCGAAACCATCTCTCTGGTGGGAGTAGAGCCAGACGGTGTCGCCGGTTTTTAGCGACAGCATTAAGCTCTGACTCTGCAGAGCTTTCTCGCCCTGGCTGTCGTCGTAGATCATTGCCTGCACCTCCAGGTGGTTCTTCATCAGCTTGACGGACAGCGTCTTCTGCGGCAGCTTGCCCACGTTGAAGGAGAAGTAGTAGGCGCCGGGAACGCGGCAGGTGAACACCCCCTCTGTCACGTTAAAGTCCTCTCCGATGTTGACGAACGCTGTGTCGAAGCCGACCGGCTGGTGCTGCGGCATGCCCACTTGGTTGACCCCCACGATGCTCTGGGTGCGCCCCACCGAGAAGGCAGATCTCTGGTCGTCCTCTTCGtcgtcctcatcctcctcttcctccctatGTTGCAATTCCTTCCCCTCTTCCGCCGCCACCGCCGCCACCACCACCGTGTCTCTCGTCCCAGACCTGACGTGCTCTGTGTCCTGGTTGCTATTCAACTGTGGGCTGTTGTCTTGCCGGGGCTGCTGGGAGTTGGAGGCAGGATGATGTCGGTGGTGGTGTGTCTGGAAGCCGTAGGTGTCGGGGTAGACGAGGTAGCCGTTGAAGGTGGTGTAGTGTCCGGTGTTGCTGTAGAGCGCGTAGCGAGGGTCACCATGGAGACGGAGCCAGACGGTATCACCGAACTCCAGCTGCAGCATGACACTCTGGCTCTGCACCT

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0060322 head development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44032 lncRNA downstream 1750 40918227 ~ 40918584 (-) True G33167
TU43971 lncRNA downstream 257779 40661458 ~ 40662555 (-) False LOC120556513
TU43959 lncRNA downstream 330670 40564244 ~ 40589664 (-) True LOC120556146
TU43948 lncRNA downstream 356403 40562192 ~ 40563931 (-) True G33109
TU43893 lncRNA downstream 525631 40281473 ~ 40394703 (-) False G33061
TU44071 lncRNA upstream 11787 40936841 ~ 40937064 (-) True G33196
TU44277 lncRNA upstream 520475 41445529 ~ 41445742 (-) True G33347
TU44302 lncRNA upstream 635778 41560832 ~ 41565475 (-) True G33368
TU44303 lncRNA upstream 641161 41566215 ~ 41566420 (-) True G33369
TU44305 lncRNA upstream 645948 41571002 ~ 41571236 (-) True G33371
XM_039795758.1 mRNA downstream 237977 40672915 ~ 40682357 (-) True LOC120556279
XM_039794190.1 mRNA downstream 248732 40666272 ~ 40671602 (-) False foxr1
XM_039794189.1 mRNA downstream 248735 40666272 ~ 40671599 (-) True foxr1
XM_039796158.1 mRNA downstream 256677 40661364 ~ 40663657 (-) True LOC120556513
XM_039795536.1 mRNA downstream 267583 40648347 ~ 40652751 (-) True LOC120556133
XM_039795681.1 mRNA upstream 4416 40929470 ~ 40934556 (-) True ndufs3
XM_039795679.1 mRNA upstream 12761 40937815 ~ 40948565 (-) True ptpmt1
XM_039795107.1 mRNA upstream 27861 40952915 ~ 40973681 (-) False prc1b
XM_039795106.1 mRNA upstream 27861 40952915 ~ 40973681 (-) False prc1b
XM_039795105.1 mRNA upstream 27861 40952915 ~ 40973681 (-) True prc1b
TU43972 other downstream 257713 40648676 ~ 40662621 (-) True G33122
TU42453 other downstream 6320793 34490660 ~ 34599541 (-) True G31955
TU42326 other downstream 7103964 33806936 ~ 33816370 (-) False LOC120555494
TU42327 other downstream 7103964 33806936 ~ 33816370 (-) False LOC120555494
XR_005638776.1 other downstream 7471273 33438463 ~ 33449061 (-) False znf710b
TU44387 other upstream 832737 41757791 ~ 41764896 (-) True sirt3
TU44774 other upstream 1474237 42399291 ~ 42402136 (-) True G33711
TU44891 other upstream 2060169 42985223 ~ 42990770 (-) True G33796
TU44958 other upstream 2289580 43214634 ~ 43214987 (-) True G33847
TU45036 other upstream 2527658 43452712 ~ 43456847 (-) True G33914

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU594550 True 3318 lncRNA 0.43 2 NC_048570.1 56960763 ~ 56972189 (+)
bowfin (Amia calva) AMCG00007162 True 1164 mRNA 0.62 1 CM030123.1 5692142 ~ 5693305 (-)