RNA id: XM_039794190.1


Basic Information

Item Value
RNA id XM_039794190.1
length 1064
RNA type mRNA
GC content 0.51
exon number 6
gene id foxr1
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 40666272 ~ 40671602 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTCCAATCAGGATGTTCAGCTCCAGCTGTTAGATGCGCAGCCTGCAGGGCTGTCAGTGAACGTGAAACTCTCAGCAGAGAGCTTCTGAACTGAACCGAACTGAGAGGGAATAAACCCAACAGCCACTTCCAACCATGACCTTACAGCTTAAAACCAAAGCTCGCCTCTTGGACCTGCACTGCTCTGTGGGCCTGACGGACTGGGACATGGACAAGGAGCTGAGACTGGCAACGACCACCGACCAGTTTTACCACGATGACAAACTGAATGATCAGTACGTGGTCCAGAGGCCTTCTGCAAGAGCCTCAAGAAGAAAAGATGAATTCATTTGGTACGATAAAACGTCCGACACCTTTGTGAAGCCAAACCTGTGGCTGTTGGTGAATCCCAGTATTGCCTGCCCGATCCAGTACGGAGAAAATACAGCAGATCTGCAGACTCTCTGTGAACCGGCTGAGGAAATCCAAACGCctctgctgaaccctgcagagACCCAACGTCAACTCGCCACAGAGCTCCACATGTTTGACCCCCATGGTGCTCCTCTCCAGGAGGAACTGCTGCACTCCACTGAGTACATGGACAATAAGATCCTAAAGCCAGGATGCTGGCCTCGCCCACCTGTGAATTATTGCATCCTCATCGCCTTGGCGCTCAAGAGCAGCCACACTGGGAGCCTCAAAGTCCAGCAGATTTACAACTTCACCAGGGAGCACTTCCCCTTCTTTCAGACGGCGCCAGACGGCTGGAAGAACACCATCCGCCACAACCTGTGCTTCAACAACAGCTTCCGCAAAACCTGCAACCAGGTGTTCAGAGATGGCAAGAGGAAGTCGTGCTTCTGGCACCTGACTCTGGACGGCCACCGGCGGCTAAAGGACGAGATCCGCACGTTGACGGGAGAATCCCTCAAGCAGCTGGAGAGGAGCATGTCGCGCCCAGaTGTAATTCAGAGTTTGTTTGCACTGTGAGTGACTGCAGGTGTAGAAGGTATCAACTAGTTTAAGTCAATGCATAATACAACTTAATAAACAGAATGTTTCTTCTGTTATGCTGAATATTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43971 lncRNA downstream 3717 40661458 ~ 40662555 (-) False LOC120556513
TU43959 lncRNA downstream 76608 40564244 ~ 40589664 (-) True LOC120556146
TU43948 lncRNA downstream 102341 40562192 ~ 40563931 (-) True G33109
TU43892 lncRNA downstream 271569 40281473 ~ 40394703 (-) True G33061
TU44032 lncRNA upstream 246625 40918227 ~ 40918584 (-) True G33167
TU44033 lncRNA upstream 248732 40920334 ~ 40925054 (-) True G33168
TU44071 lncRNA upstream 265239 40936841 ~ 40937064 (-) True G33196
TU44277 lncRNA upstream 773927 41445529 ~ 41445742 (-) True G33347
TU44302 lncRNA upstream 889230 41560832 ~ 41565475 (-) True G33368
XM_039796158.1 mRNA downstream 2615 40661364 ~ 40663657 (-) True LOC120556513
XM_039795536.1 mRNA downstream 13521 40648347 ~ 40652751 (-) True LOC120556133
XM_039795933.1 mRNA downstream 35147 40598769 ~ 40631125 (-) True LOC120556376
XM_039795934.1 mRNA downstream 35147 40610568 ~ 40631125 (-) False LOC120556376
XM_039795551.1 mRNA downstream 76707 40564241 ~ 40589565 (-) False LOC120556146
XM_039795758.1 mRNA upstream 1313 40672915 ~ 40682357 (-) True LOC120556279
XM_039795681.1 mRNA upstream 257868 40929470 ~ 40934556 (-) True ndufs3
XM_039795679.1 mRNA upstream 266213 40937815 ~ 40948565 (-) True ptpmt1
XM_039795107.1 mRNA upstream 281313 40952915 ~ 40973681 (-) False prc1b
XM_039795106.1 mRNA upstream 281313 40952915 ~ 40973681 (-) False prc1b
TU43972 other downstream 3651 40648676 ~ 40662621 (-) True G33122
TU42453 other downstream 6066731 34490660 ~ 34599541 (-) True G31955
TU42326 other downstream 6849902 33806936 ~ 33816370 (-) False LOC120555494
TU42327 other downstream 6849902 33806936 ~ 33816370 (-) False LOC120555494
XR_005638776.1 other downstream 7217211 33438463 ~ 33449061 (-) False znf710b
TU44387 other upstream 1086189 41757791 ~ 41764896 (-) True sirt3
TU44774 other upstream 1727689 42399291 ~ 42402136 (-) True G33711
TU44891 other upstream 2313621 42985223 ~ 42990770 (-) True G33796
TU44958 other upstream 2543032 43214634 ~ 43214987 (-) True G33847
TU45036 other upstream 2781110 43452712 ~ 43456847 (-) True G33914

Expression Profile