RNA id: TU43948


Basic Information

Item Value
RNA id TU43948
length 1740
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G33109
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 40562192 ~ 40563931 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGAGCTTAAATTGTATTCCATATTAACAGTCTGcttctaaaatgttttgcattcaATTTCTCAGAACTTTATTACCtctgccaaggaggttatgttttcggtACGGtttgtttgtcagcaggattTTGAAAATATTACTGGCCCAAATATCATAAAACTTAATGGAAGAgggtagcatgggccaaggaagaacccattacattttggagtgaACCGGAATCACGTACTCGTAACTTTTAgagtattttttataaaagcTTAAATGtttcttgtaggctactttttatcACAAGTATTGTCATGTGTACAATAGTCATGAGTACAGGTGTACTCAGTctgtttacctgtctgtctgtttacctgtctgtctatctgtttacctgtctgtctgaagtGGCTGGTGTCTGAGAAGTGACACTGCACTCAGCTGACCCTCCAGAAAAGATTAATGTTGAATGTGTACGTTTACCAGCCGACTGgcagggggttagggttagagtcaTACCTAAGCCAGGCGTAGCAGTTTGTGAGCTATACATAAATGCCCaactataaaataaaattaaggaTGAGGACATTATGGGTTAAGGTGCCTCTACCTTAATTGATCAATGATTTAATTAAGAAAAATAGCAGAGCTGATGTTGGAAATTATAGGCAAGTATCAATTCTGTCAACTATATGAAATATTTCTGAGCGGCTTCTATATGAACAGGTGGAGGAGTATCTCATCAGGCTTGATCTTTTATATGAGCTCCAGTCTGGTTTTAGAGCTGCATATTCTACTGACACCTGTCTCACTCACCTTTTCGACTATGTGAGTCAGAATTTTAATCAAGGGAATTATGTTGGTATGCTACTACATGGTTCACTTCTTACCTAACAGATAGAACTCAACTCTGTGATGTTGAGGGGACCCTCTCTGAGCCACAGAGTATAACATGTGGGGTGCCCCAAGAATCAATCCTGGGGACCCTGTTATTTTTAGTATATATGAATGACATATTAGCTGCGGTATGGTGCAAGTTACTATTATATGCTGATGATTCTGCTTTACTTGTCCCAGGGTGTAATGTAAAAGACATTGAAAATACTCATTGGCAGAAAGCTTGAGTCTGTCAACCAGTGGCTAGTAGACAATAAGCTATCTATGCATCTGGGCAAGACTGAATCAATCTTGTTTGGTACAAAAAGGAAGTTGGCAAAATCAAATACTTTAAAGGTGATGTGTAATGGGTCTGAAATTGTATCCAGTCAAGTGTCACATATTTGGGTTTAACATTGGATCAATCACTTATAGCTGAATCCATTGCAGCCAAGGTTTTAGCAAAAAGTGCCTATAAGTTGAAGTTTTTATATCGCAAGGCAACGGTTTTTGATTTTTCTGTAAAGAAATTATTGGTATTAACTCTGATTCAATGTCATTTGGATTTTGCTTGCTCTGTATAGTTTTCTGGGTTGACTGTGAAACCAAAACAGTGTTATTCTGTACCTGTTAAAAGCACTCCCCTGTACTCATATAGGTAGGGAGGAGTTTACAAGAGCTGGTCTACTACCCGTACATCTAAGAGTAGAACAACTTAAGCTGAACTATATGTTTAACATTGTTAATGGTCATGCCCCCAAATATTTATGCTCTAATGTAACCATGGTCCATATGCAGCATAGTCATAATACTAGGGCCAGTATAGTTTCTAGAGCTAATAATgcaattaaaaattaaaaattattatataaCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43892 lncRNA downstream 167489 40281473 ~ 40394703 (-) True G33061
TU43893 lncRNA downstream 167489 40281473 ~ 40394703 (-) False G33061
TU43903 lncRNA downstream 227245 40331750 ~ 40334947 (-) True G33068
TU43873 lncRNA downstream 353417 40207391 ~ 40208775 (-) True G33048
TU43768 lncRNA downstream 510853 40049624 ~ 40051339 (-) False LOC120556511
TU43959 lncRNA upstream 313 40564244 ~ 40589664 (-) True LOC120556146
TU43971 lncRNA upstream 97527 40661458 ~ 40662555 (-) False LOC120556513
TU44032 lncRNA upstream 354296 40918227 ~ 40918584 (-) True G33167
TU44033 lncRNA upstream 356403 40920334 ~ 40925054 (-) True G33168
TU44071 lncRNA upstream 372910 40936841 ~ 40937064 (-) True G33196
XM_039796156.1 mRNA downstream 146129 40386097 ~ 40416063 (-) True LOC120556512
XM_039794084.1 mRNA downstream 248387 40244929 ~ 40313805 (-) False samd4a
XM_039794083.1 mRNA downstream 248387 40244929 ~ 40313805 (-) False samd4a
XM_039794080.1 mRNA downstream 248387 40244929 ~ 40313805 (-) False samd4a
XM_039794082.1 mRNA downstream 248388 40244929 ~ 40313804 (-) False samd4a
XM_039795545.1 mRNA upstream 310 40564241 ~ 40589567 (-) False LOC120556146
XM_039795546.1 mRNA upstream 310 40564241 ~ 40589567 (-) False LOC120556146
XM_039795550.1 mRNA upstream 310 40564241 ~ 40589566 (-) False LOC120556146
XM_039795549.1 mRNA upstream 310 40564241 ~ 40589566 (-) False LOC120556146
XM_039795553.1 mRNA upstream 310 40564241 ~ 40589565 (-) False LOC120556146
TU42453 other downstream 5962651 34490660 ~ 34599541 (-) True G31955
TU42326 other downstream 6745822 33806936 ~ 33816370 (-) False LOC120555494
TU42327 other downstream 6745822 33806936 ~ 33816370 (-) False LOC120555494
XR_005638776.1 other downstream 7113131 33438463 ~ 33449061 (-) False znf710b
TU42136 other downstream 7214102 33342247 ~ 33348090 (-) True wdr76
TU43972 other upstream 84745 40648676 ~ 40662621 (-) True G33122
TU44387 other upstream 1193860 41757791 ~ 41764896 (-) True sirt3
TU44774 other upstream 1835360 42399291 ~ 42402136 (-) True G33711
TU44891 other upstream 2421292 42985223 ~ 42990770 (-) True G33796
TU44958 other upstream 2650703 43214634 ~ 43214987 (-) True G33847

Expression Profile