RNA id: CI01000026_10695298_10696443.mRNA


Basic Information

Item Value
RNA id CI01000026_10695298_10696443.mRNA
length 1765
RNA type mRNA
GC content 0.45
exon number 2
gene id CI01000026_10695298_10696443
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10694795 ~ 10696652 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCTCCCACTGGCACTTGTATGCATAATGATTGCTCTTTTTTTTTTCCAAGCTCATGTGTCGGTAACAAGCAGCAGCTATCATTTACAATCTTAACTGAAAGTGATAATTTAAATAAGAGTGTTCAACAGTTTTTGTTTATGTTAACAGCTTCGGTTGATGATACTTAATAGAGCTGTTTTGTTATTCTTTGTTGCCTCTGCAGTTACAATGCTGCCTGGTACCAGGCCCCTGCTGCTGTGTGTGCTGTGTCATGTGACCACCACATGGGCATTTGCCCGCATGTCTGACGCCGTGGAGCTGCGGTCCGCGTTCTCTGTGGCACGTACCAGCAGCATGGAGGGAGGGCCGAAGATGGTCATCACCTTTGACAAGGTGTACGTTAACATTGGTGGCGATTTCGATCCAAAGGCCGGCTTATTCCGCTGCAGGATTCCGGGTGCATACTATTTTTCTTTCACAGTGGGGAAGTTCCCACGCCGAGACCTGTCGGTCATGCTGATGAAGAACCGCAATGAGGTTCAGGCGATCGTGTACGACGAGAACGCCGGAGAAGAGAGGAAAGTGCAGAGCCAGAGCGCCATGCTGCAGCTTGATTTCGGAGACACTGTCTGGCTTCGTCTTCATGGAGACCCTCGCTATGCTATCTACAGTAACACTGGTCATTACACCACCTTCAATGGTTACCTGATCTACCCTGATCTGTACGGCTACCAAGAGCCGACACACAAAGTCCATGACAGTGATCATCAACCACCGAAAATCAGCGATCACTTACTGTCTGAGCATGAAAATACGATTACCAAAGACACTGTTGTGGTGGGCCGCACTCAGAGTATTGTGGGAGTGGATCAAGGATACCCTGAGCACCAGCCTATCATCTTTGACACTGAGTTTGTCAACATCGGCAACAACTTCAACTTAAGCACTGGTATATTCAAATGCAGTGTACCAGGAGCCTATTACTTCTCCTTCAATGCTGGCAAGCTGCCCCATAAGACCCTGTCAGTGAAGCTGATGAAGAACCATTTGGAGGTACAGACCATGATCTACGATGACAGCGACACTGAGAAGGCCCTGCAGAGCCAGAGTCTGATGTTGTCACTGCAGGATGGAGACACTGTCTGGCTCTACAGCCACCAGAGGGATGGATTTGGTGCTTACAGTAATCACGCCAAGTATATCACTTTTACTGGCTTCCTGGTATATCCTGAGCTCCACCAAAGCCCTCCTCAGCAGCAGAAACAGGATAAGACATTGTAGGCCAGTCAAGGAGCCAGTGTGTCTGTGGGTCTTTAGGAAGGGTAAGGTTTCGGAGGAGCGTTTGTGTGGAAAAAGTGTGAGTTCCCTACACGCAGTCTTCTACACTCTCGAGACTGTATGCCGTCACTCATGTGGTTTGCTTTTTCAGATTCCTTATTGCAGAAATCTCTGAAGCTTTTGTTTTTATTCTGTTTATCTGCTTTAGGAAGAAATTACTAAGTCAAGCAAGCAGCACCTATAACACATTGGTTAAACAAGGCCTACTCAGCATCCCTAAAGTCAGCATGAAACGGAAATTGTGATGTTTTTCTTCCCTGTTGTCCATCTGGAATTGATTTATAATAAAGACTGCAACATTCCATAAAATAAGAATTGTCAATTTTGATTTCATGGTGACTTTAAGGCCTTGGATGCTGAGTTCTCACAAGAATATGATTAAAAATACAAACAGGTCGCTTTTAAATTAATATAAATCATTTGTAAAGATATTAATACAAAATAAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152243 lncRNA downstream 9076 10684072 ~ 10685719 (-) True G133870
TU152237 lncRNA downstream 64376 10630209 ~ 10630419 (-) True G133866
TU152133 lncRNA downstream 66744 10552933 ~ 10628051 (-) True G133786
TU152132 lncRNA downstream 67763 10551667 ~ 10627032 (-) True G133785
TU152073 lncRNA downstream 147191 10547355 ~ 10547604 (-) True G133741
TU152209 lncRNA upstream 57434 10754086 ~ 10754493 (-) True G133838
TU152191 lncRNA upstream 118165 10814817 ~ 10817409 (-) True G133820
TU152152 lncRNA upstream 137363 10834015 ~ 10859589 (-) False G133790
TU152154 lncRNA upstream 137363 10834015 ~ 10837716 (-) False G133790
TU152151 lncRNA upstream 139649 10836301 ~ 10859589 (-) True G133790
CI01000026_10658906_10667378.mRNA mRNA downstream 27042 10658574 ~ 10667753 (-) True CI01000026_10658906_10667378
CI01000026_10599580_10600367.mRNA mRNA downstream 94428 10599203 ~ 10600367 (-) True CI01000026_10599580_10600367
CI01000026_10487830_10511296.mRNA mRNA downstream 182056 10485815 ~ 10512739 (-) True CI01000026_10487830_10511296
CI01000026_10421310_10440151.mRNA mRNA downstream 253868 10420159 ~ 10440927 (-) True CI01000026_10421310_10440151
CI01000026_10347872_10351783.mRNA mRNA downstream 343012 10347746 ~ 10351783 (-) False CI01000026_10347872_10351783
CI01000026_10713071_10715415.mRNA mRNA upstream 15574 10712226 ~ 10715727 (-) True CI01000026_10713071_10715415
CI01000026_10721380_10724373.mRNA mRNA upstream 24429 10721081 ~ 10724527 (-) True CI01000026_10721380_10724373
CI01000026_10730656_10743321.mRNA mRNA upstream 34004 10730656 ~ 10743321 (-) True CI01000026_10730656_10743321
CI01000026_10750149_10752108.mRNA mRNA upstream 53217 10749869 ~ 10752108 (-) True CI01000026_10750149_10752108
CI01000026_10755400_10761893.mRNA mRNA upstream 58383 10755035 ~ 10761898 (-) True CI01000026_10755400_10761893
TU151953 other downstream 345838 10348193 ~ 10348957 (-) True CI01000026_10347872_10351783
TU150940 other downstream 1144151 9550030 ~ 9550644 (-) True G132721
TU150764 other downstream 1307079 9387151 ~ 9387716 (-) True G132575
TU149845 other downstream 2387088 8306776 ~ 8307707 (-) True G131742
TU148111 other downstream 4377641 6275511 ~ 6317154 (-) True G130256
TU152144 other upstream 90687 10790055 ~ 10790154 (-) True G133789
TU152143 other upstream 90813 10790055 ~ 10790154 (-) True G133789
TU152150 other upstream 137363 10834015 ~ 10837605 (-) False G133790
TU152172 other upstream 605263 11301915 ~ 11307181 (-) True G133802
TU154700 other upstream 3858265 14554917 ~ 14555436 (-) True G136110

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00067947 True 1507 mRNA 0.50 2 NC_007118.7 38601949 ~ 38612230 (-)
bowfin (Amia calva) AMCG00007162 True 1164 mRNA 0.62 1 CM030123.1 5692142 ~ 5693305 (-)