RNA id: CI01000026_10755400_10761893.mRNA


Basic Information

Item Value
RNA id CI01000026_10755400_10761893.mRNA
length 1351
RNA type mRNA
GC content 0.41
exon number 8
gene id CI01000026_10755400_10761893
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10755035 ~ 10761898 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGTGATGAGGTTACTCGTCTACATTGATCACCTGACTGGGACTGGGCGCTTTTTCCTCATTATCCGGCAGGTGGCGCACGGTTACATCACATTAACAGACACAGCTGTACCTGTATGCAAGAAAAGGGATTCTAACCATCATATGTTCAAAATGTTTATGCGTAAACAGGACATCTTTGAAAAGAGCTCTGAAGAGATTGATAACAACAGTGGACAAAATGATATATCAGTGACAGCTGTAATTGAAAGGACCAACAGACATGCAGGACAGGGACTGAATGAGCCCTCAATCATGTTTGGAGACATCGCTGTAGCAGCAGGCTTAGAAATTGCTGGTCCATGCACAGCTCGTGGGTGCAAATGGCAAAGAAGCAAAAACGGACAAGTCCTTGTGCCCTATGTCATCTCTGATGAATACTCCTCCCGGGAGAAGGATGTAATTTTTCAAGGCTTGAGATCTTTTGAAAAATCGACCTGCATTCGCTTCATGCCTCGCACAAATCAGAGGGACTATATCAACATAGAGTCTAATTCAGGGTGCTACTCTTTTGTTGGCCGTCGCATCGGAGGTCAGACTGTGTCTCTGGACCGTGCTGGATGCATCTCCCTGAATATAGTGCAGCATGAGCTGCTTCACACACTGGGCTTTCACCATGAACACAACCGCAGTGATCGTGACAATCATGTCCAAATCCTTTTTAAAAACATCTTTCCTGGGCAGGAGCAAAACTTTGACAAAATCAAGACTAACAACCTGGAGACTGCCTATGACTACAACTCTGTAATGCACTATGGAAGGCAAGTTTTTCTGCAGTTTATACCCCAAAAACAGCTGAAAAACTGGTTTGCCTTCTCCAAGAACAGAGAGCCAACCATCATCCCTATTCCTGACAGTAGCGTGTCTATTGGCCGAGCTGAGAAGATGAGTTCAAATGATATTCTGCGTGTTAACAGACTCTACTGCAGTCCTGCCTTCTCTTATTAATTCATTTAAAACAATAACATTTTGAAAGCTTTGTCATCACAGGATGAAATTGCTGTCTGCTTTGAATAACATTGATAAGGAAATGCATGTATAGTTTGTATGTATACATGTTTCTTTTTTCAGAATGGAACAAAAATTTGTCTTTGTGTTATCAAACTTGGAAAACTTTGAAAAATGACAATTTCAGTATTCAATGGAGGACTAAATACTTTACAGATTCAGTTTATGTGATGTGATTAGCATCATTTTATAAACCCTTAGAGTTGAGGCTGTTTTTAATGCACAGTTTTTAAATCATTTGAGGGTTGCAACTTTTAGGTAGTTTGGCATAGAGATGGAATGTTCTAAACACACAACTGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152209 lncRNA downstream 542 10754086 ~ 10754493 (-) True G133838
TU152243 lncRNA downstream 69316 10684072 ~ 10685719 (-) True G133870
TU152237 lncRNA downstream 124616 10630209 ~ 10630419 (-) True G133866
TU152133 lncRNA downstream 126984 10552933 ~ 10628051 (-) True G133786
TU152132 lncRNA downstream 128003 10551667 ~ 10627032 (-) True G133785
TU152191 lncRNA upstream 52919 10814817 ~ 10817409 (-) True G133820
TU152152 lncRNA upstream 72117 10834015 ~ 10859589 (-) False G133790
TU152154 lncRNA upstream 72117 10834015 ~ 10837716 (-) False G133790
TU152151 lncRNA upstream 74403 10836301 ~ 10859589 (-) True G133790
TU152181 lncRNA upstream 86156 10848054 ~ 10850265 (-) True G133810
CI01000026_10750149_10752108.mRNA mRNA downstream 2927 10749869 ~ 10752108 (-) True CI01000026_10750149_10752108
CI01000026_10730656_10743321.mRNA mRNA downstream 11714 10730656 ~ 10743321 (-) True CI01000026_10730656_10743321
CI01000026_10721380_10724373.mRNA mRNA downstream 30508 10721081 ~ 10724527 (-) True CI01000026_10721380_10724373
CI01000026_10713071_10715415.mRNA mRNA downstream 39308 10712226 ~ 10715727 (-) True CI01000026_10713071_10715415
CI01000026_10695298_10696443.mRNA mRNA downstream 58383 10694795 ~ 10696652 (-) True CI01000026_10695298_10696443
CI01000026_10775368_10777914.mRNA mRNA upstream 13224 10775122 ~ 10778968 (-) True CI01000026_10775368_10777914
CI01000026_10788054_10788652.mRNA mRNA upstream 25572 10787470 ~ 10789709 (-) False CI01000026_10788054_10788652
CI01000026_10793317_10799991.mRNA mRNA upstream 29894 10791792 ~ 10801376 (-) True CI01000026_10793317_10799991
CI01000026_10851071_10860344.mRNA mRNA upstream 89173 10851071 ~ 10860344 (-) True CI01000026_10851071_10860344
CI01000026_10872568_10886442.mRNA mRNA upstream 110448 10872346 ~ 10886442 (-) True CI01000026_10872568_10886442
TU151953 other downstream 406078 10348193 ~ 10348957 (-) True CI01000026_10347872_10351783
TU150940 other downstream 1204391 9550030 ~ 9550644 (-) True G132721
TU150764 other downstream 1367319 9387151 ~ 9387716 (-) True G132575
TU149845 other downstream 2447328 8306776 ~ 8307707 (-) True G131742
TU148111 other downstream 4437881 6275511 ~ 6317154 (-) True G130256
TU152144 other upstream 25441 10790055 ~ 10790154 (-) True G133789
TU152143 other upstream 25567 10790055 ~ 10790154 (-) True G133789
TU152150 other upstream 72117 10834015 ~ 10837605 (-) False G133790
TU152172 other upstream 540017 11301915 ~ 11307181 (-) True G133802
TU154700 other upstream 3793019 14554917 ~ 14555436 (-) True G136110

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00067961 True 916 mRNA 0.45 8 NC_007118.7 38661804 ~ 38664969 (-)