RNA id: TU554271


Basic Information

Item Value
RNA id TU554271
length 3529
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G487662
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24019572 ~ 24023100 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATATTGTTTCAAGTCAGGTTGGTTGAGTCAAATTCCCAGTTGGCCTTATCGATAAGTAAAGAGCTTCCATCCTTCACCACCAGAGAGCAGTCTTGGTGTGTTTTCCTGTATATTCTGTTATCCCAGATGCTAACTTCCCCTTCCTAAAAAGGAACTCCGAGCACTCTTGTCTCGAATTTACACTCATTACATGTCAATTCCATACTTTCAAAGGAAATTGCAAGCTTGTTTTACTATACAGTAAAAGGTGACATATGACATGTGCCTTTTACAACTTGTGTATAAATCTTCGACCTCCATGGCCTGTGGCTATCTATTGTCCCTGCCAGGTGGTAATGGACCTGATGTCTGGAGACCAGACACAAAGCCTCACTGTGCCAGGCAATTCCAGTTACTATGTAGCATTTAACTCATGTAAGGTATGcaagaaggagagaggactggacaTTCCTCACAATGATTTGACACATTCCTGCCCTTGGGTTTCTTAAAAGCCTATATGTCTTGTTTGTCTGGCATGCTACATGTACAGTATTCATGCATGTTCATATTTCATAGCAGTTAGCTGGATTgttccaccaattcggtgccttttgaAAGTGTAACTTGGTCAACCTAATttgatttcacctaattttaacattgtCATAAAAAGCACTTTTCTTTTACCCTCTCgaggttaaataataataataataaaaagactacagggttgactgtaacaaggttggtgatttaatCTTAAATACCCTTGTGAATCTTcaaaatgactttgtcaaagcaacaaaataactttagAATGATGGTGAAAATGTTagggttaagtgggttaaaaaatcttcctagaagtcagcACGGAGGAGCATGTCAACATGCTGAATTTAGTTAATTAAATATGTGGTCTTTATtaaaagggcacttcatttaatataacacacGGTTAatattcaatattggtgcacaatttctacttaaaatattggcagcagaatggccttaatgaagagctcagtgactttcaatatgGCGCCGTCATGggatgccaactttccaacaagtcagtttgtcaaatttctgccctgctagagctgccctggtcaactgtatgtgctgttattgtgaagtggaaatgtctaggagccacaactgctcagccatgaagtggtaggccaaacaAGCTCACAGGACGGGACCGCTAAAGCATGTAGCGCgttaaaatcgtctgtcctcggctgcaacactcactactgagttccaaactacctctggaagcaacgtcagcacaagaatgattcgtcaggagcttcatgaaatgggtttccatgaccgagcagccgcacacaagtctaagatcaccattcTCAATGCCAAGCTTCtcctggagtggtgtaaagctcaccgccattctctggagggatgaatcacgcttcaccatcgggcagtccaacagacgaatctgggtttgcagaacgctacctaccccaatgcatagtgccaactgtaaagtttggtggaggaggaataatggtctggtgctgtttttcatgattgggactaggccccttagttccagtgaagggaaatcttaacggaACATTCTAGGCAATtctttgcttccaactttgtggcaacagtttggggaaggcttcctgtttcagaatggcagtgccccatgcacaaagtgaagtccatacaaaaatggtttgtcgagattggtgtggaagaacttgactgacctgtacagagctctgacctcaaccccatcgaacacctttgagactaattggaacgccgactgcgagccactTATGCTCTTGTGGCAGAATGGAACCAAGTCcgcgcagcaatgttccaatatctagtggaaagccttcccagaagagtggaggatgttatagcagcaaaggggggaccaactccatattcatgCCTGTGATTTTGTAATGAAATGTTCGACaatcaggtgtccacatacttttggtcatgtagtgtggcTCTGTAAAGACATGGATCAGCTTATTGCTACACTGAGTGACAGGTCCAGATATATGGTGATCAAAACCAAATAACAATGTGATAAGGATCATCGGATTGATCCATTGCCTGTTACTATGGATGCTTAGGCGAAGGGATTACTTTTGGGAAATCTTTGAGTTTTCATCTTTTGGGATAACGTTGAAGCCTTTCCATTTAAAAATGTTATATTCATTTGGGAAAATCATGAGGCCTGTTGGGATAAAGATCCGGCCTTTGCTTTGGGAAAATAATGGACAGTCTGACCAAAGCCTTTTTTTCAAGTTTAGAGGCAACTCAAGGTTTGTAGTCAGATGTGTCAAAGGTTTTTAACTATTATGTTGTAGGCACTTTAGGAAATTATTCAGTAGAGATTAAGACTTAATCGATGCACAACACTTATTATTGCTACAATATATCATTCCACTGAATGCTGCATGTTTGTTGTACAGGTCACCTCTTAAGACCTCACTAAAAAGCAATAAAAGGTGAATGGAGGTCAagtaaacaaaaacatatttgatttttttatttaacctggcaagaccattaagaacaaattcttatttacaatgacggcttaacccggacgacgctgggccaattgtgcgctgccatatgggactcccaatcatggccggttgtgatacagcctgaaatcgaacctgggtctgtagtgaggcCTCTAGCACTGATGCAGTGCTTGgaacactgcgccactcgggagccacatAGCCTTTCTCCACCCAAGTGTATAGTGGCCTGTATCACATATTTCCCATTTTGCAGCAATTCTAGTTTAATTTAATGCTTAAAATGTGTATATAAGACTAATTTGTAAAACGTCATTTtgtaaataatttttttttttgtgtgtgtgtacacatccaTATTTGATGATCATAATCCACCATTAGCCATAAATCATGGTAGAAACTGAATCTATATTTTAGCTAGACAATCTTGACACTAACTTTACAGTTTAAAAAGCAAACATATGCAATGCTTTCTTCCCTAGAAATATTCATGTCTTCTCAGCACAATGGTTTTAATTTAGTTTATTCAGAGAGGCCtttggtatttctatgtttttatttattttgtatttcacctttatttaaccaggtaggccagttgagaacaagttctcatttacaactgtgacctggccaagataaagcatagcagtgtgaacagacaacaacacagagttacacatggagtaaacaataaacaagtcaataacacagtagaaaaaaagagtctatatacattgtgtgcaaaaggcatgaggaggtaggcaactAATTataattttgcagattaacactggagtaatgaatgatcagatggtcatgtgcaggtagagatactggtgtgcaaaagagcagaaaagtaaataaataaaaacagtatggggatgaggtaggtaaattgggtgggctatttactgatggactatgtacagctgcagcgatcggttagctgctcagatagcagatgtttaaagttgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU554318 lncRNA downstream 1546 24017745 ~ 24018026 (-) True G487708
TU554291 lncRNA downstream 50918 23968449 ~ 23968654 (-) True G487681
TU554283 lncRNA downstream 61790 23957574 ~ 23957782 (-) True G487673
TU554280 lncRNA downstream 65404 23953876 ~ 23954168 (-) True G487670
TU554261 lncRNA downstream 89801 23929251 ~ 23929771 (-) True G487656
TU554421 lncRNA upstream 168150 24191250 ~ 24191474 (-) True G487795
TU554424 lncRNA upstream 171662 24194762 ~ 24195075 (-) True G487798
TU554427 lncRNA upstream 174966 24198066 ~ 24198697 (-) True G487801
TU554431 lncRNA upstream 178822 24201922 ~ 24202251 (-) True G487805
TU554433 lncRNA upstream 181781 24204881 ~ 24205232 (-) True G487807
XM_021605782.2 mRNA downstream 47299 23970088 ~ 23972273 (-) True LOC110525566
XM_036979693.1 mRNA downstream 71069 23943886 ~ 23948503 (-) True LOC110525565
XM_036979694.1 mRNA downstream 71334 23943886 ~ 23948238 (-) False LOC110525565
LOC110525564 mRNA downstream 101508 23915796 ~ 23918064 (-) True LOC110525564
XM_036979691.1 mRNA downstream 107833 23888654 ~ 23911739 (-) True LOC110525561
XM_021605785.2 mRNA upstream 1446 24024546 ~ 24031999 (-) True LOC110525568
XM_021605783.2 mRNA upstream 8969 24032069 ~ 24041920 (-) False LOC110525567
XM_021605784.2 mRNA upstream 8969 24032069 ~ 24041920 (-) True LOC110525567
XM_021605788.2 mRNA upstream 36811 24059911 ~ 24071705 (-) True LOC110525572
LOC110525317 mRNA upstream 49514 24072614 ~ 24079048 (-) True LOC110525317
TU554111 other downstream 301789 23713875 ~ 23717783 (-) True LOC110525552
TU554033 other downstream 434018 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other downstream 434018 23583036 ~ 23585554 (-) True LOC110525180
TU553494 other downstream 627510 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 633665 23385534 ~ 23385907 (-) True G487022
TU555138 other upstream 330433 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 637797 24660897 ~ 24674901 (-) False LOC110525585
TU555288 other upstream 683471 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 1083105 25106205 ~ 25106570 (-) True G489038
TU556319 other upstream 1473863 25496963 ~ 25497489 (-) True G489511

Expression Profile