RNA id: XM_021609743.2


Basic Information

Item Value
RNA id XM_021609743.2
length 6592
RNA type mRNA
GC content 0.54
exon number 34
gene id LOC110527996
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53636783 ~ 53703957 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAGTGGCCACAACGCCATGTTAACGAAGTCTCTCATCTCCGTGGAAAAATGATTAGCTAGCTATAGAAAAATCAGTTGTTGATAACAAATGTTAAATTATCGAAGGAGGAAAGACACCGGTGACAGTGCTCGGAAGAACTGAACCGGATCTGCAGAGGTCCTGGACGGGCAAGGGAGGCAAACCTCCCACCGTCCCCATGAATAACACCATAGACCCGAACAGCGACTTTCCATGAAAAAAAGCTTTTCTGCGTTGCTAATAGCTAGCCCTGTCGGGAAAAGGATTTGCGGCCTGCTTCAATAATATCAAACGCTTGCTAGCTATATTTATGCAAGCTAGATATATTTTGTATCAGTATTTATTagtgtattgttttgtttttttgcaatGAGTTTGCCGACGAAAATAGTCCAAAAACCCGCCACTGTCGCAGTAAGTGGACCTGGAACTGTCCCGTCTCCGTCGAGCCAACTGCGGGCTACCCTGACCTCCGTGTCTTTACCACCGGGAGCCCCAGGTGCTCCTCAGTCGAACGCCGTGCCGCCACCTCAAATTTTCCTTAATATGACGCGTCCCAGGATCCCTCGGGTTCAGCCATCCCTGGATGACCGCATCTTCCCCACACAGCCCGGCGTCACTGCCGTCTACAgcGTACCGAGGCACCCTGGTCCTCCCTACACGGCTCATGACATCACAAAGGGACACCCTAACTTGGCGGGCACACCGCCAGGGCATGCCCACTCACCGGCGCTCTCTCAGGTATCAGTACCCACAGCTTCCCCATATCGCTACCCTAAGGGCTGGGAGGCAGGCGGAGGGTCTCCATACACCACTGGACAGAATGCTGGCTCCACACCTCTAGTGTATTCTCCTCAGACCCAGCAAATGAATGCACAACCACAGAGTCGCCCGTTTGCGACGGGCCCTCGACCAACCCACCATCAGTTTTTCCAGAGGGCTCAGATGCAGACAGCGCGGCCAACCATCCCCACCAACACTTCATCTCTGCGGCCCGGCTCTCAGAACCCCACAGCGGCGGTATACCCCCCCAACCAGCCCACCATGATGATGATGGCCCCCATGCCCTTCCCCTCCCCACAGGCTGCCCAGTACTACATCCCACAGTATCGCCACAGTACGCCCTATGTGGGGCCGCCCCAGCCGTTTTCAGTGCAGCCGCCGGGGTCTGGCACCTTCTATCCTGGCCCTGGGCCGGGGGAGTACCCTGCTCAGTATGCTCCCGGACCTCAATTCTATCCAGGACAGCAGGTGTACCCCCCCTCACCCCCCATCATAGTGCCTACACCGCAGCAACCTCCACCAGCCAAGCGTGAGAAGAAACCAATCCGTATCCGTGACCCCAATCAGGGAGGCAGGGACATCACAGAGGAGATCATGGCAGGGGGCACAGGGAGCCGGAATCCAACTCCCCCTGTCGGACGaccctcctccacccccacccctccgCAGTTTTTATGGCCGCACCCTCATTATCCTCACATTTTCTACCTCAAATCGCAGCAGCAGCAGCCGAGCGGCAGCCAGACTCCGGAGCAGGGCCAAGGCCAGGCCCACCCAGCCTACAGCCTGGAGCCCCCCAAGCAGCAGCAGCCCACGCCTGGGGCTGCAGACAGCAAACCAGGGCCAGTATATGATAAGCCAAAATTGGAGCCGGTTATCCGGAAGCCTTCCTCTCCCGGGATTGGACAACCAGAACCTTCTATGGCGTGGCAAGAGGCCAGTGCACCTGTAACTGCCCCATCTCCCCCTGTAGAAAAAGAGCTTCCCTCTCCTGCCCCAGTGATGGTGGCGCCCATCACTGCCCCTCGTCCTGTTGCCAGCCCCAACCCCATTGAGCAGCCCTCTGCAGTGGAGCCTGCTACTCCCACTCCCTCTGCAGCTGAGCCCAAGACCCTGCCTCCCACGACTCATTCCCAGACCCCAAACACAGTGGAGCCTCTTCCAGAAGCCCCACACACCCTGGCTGCTTCCCCCACCCTAACCCCAAAAGCTTTGAATGGCCATGCTGAcactggggctgagctggacACCCAGGCCCAGGAGCCCTCCCCCCTagatccctctccctccccaccccagCCCCAGGCTTCAACCCCGGCCTTCAGAGAAGACTGTAGTGAGGCTGTGCCCAGTGAGGTGAGAGCAGAGATTCCCCCTGCTGTCACGGGCTCTATCGCACCCATCACTGTAGTGCCAGTCACTCTGACCTCCAAACCTGCGCCTGCTTTTCCAGCACCTCCCCCTGGCCTTCCACCACTAGTGCAGGCCACAGCGGAGGCCAGCAAGCCCGCCGACACTAAAGACGTCCCTCTCAAAGCAGGGACAGAGGCATTCATAACACCAGACAACAAGCCTGAACCACAGCTACAAGCCCTCTCCAGAAAGAGTCCCACTACAGGATGTCAGGCTGCTCCTGATGCACCAAAGACCTGGAAGAAACCAAATGAAGAGAGTCCTGTTGGAGATGCCCAACAGAGGGAGACTGAGgagGAGCTCAAGCCTTTGGAAGAGGCTGCTGGAGACCAGGCCCTGCCACCCGCCAGGAGCTGCAGCACCTCTCCCCCACCCTCAGCAGCTCCCTCAGCCctggaggcagaggagaggccCCCAGCCCCTGAGGAAAACGGGGAGGCTGAGCCCATGAGGAACGGAGCAGGACACACCTCGGAGACTGAGAGCAGTGACAGCGGGGCCACCCCTGGGGACAATGAGGGCTCCACAGGAGCCCCCCCAGACCTCTTCCAGGACGATCTGGAGACTAATGGGAAGCGTCAATACAAACGGGACTTCCTGCTGGGCTTTCAGTTCATGGCTGCATGTACACAGAAGCCAGACGGGCTGCCTCAGATCAGTGACGTTGTGCTGGACAAGATAAACCAAAACAAGCTGCCAACCCGGGCGGTAGAATCCAGGGTGATCTCCCGAGGCCCTGACTTCACACCGGCCTTTGCTGACTTTGGCAGACAGATGAGTGGAGGACGCGGCGGAGCTGCAGTGAGTCACACTCACTCCCAGGCTCACCAGATGATGAACATGGGGGGGGGTGCCCGGCGGCCCCCGCCCAGGAAGATTATCCTGAACGTGTCAGCGAATGAAGAGGTGCAACTGAAGAAGGCTGAGAATGCCTGGAAACCCGGCATGAAGAGGGCGGGGCCATCAGATGACCCTGAGGTCATTACAACACAGGAGCTCTTCCGGAAGGTGCGCAGTATCCTCAACAAACTGACGCCTCAGATGTTCAACCAGCTGATGAAGCAGGTGACAGACCTCACCATCGACACGGAGGAGCGCCTCAAGGGCGTCATCGACCTGGTCTTTGAGAAGGCCATCGACGAGCCCGGCTTCTCTGTGGCCTACGGGAACATGTGTCGCTGCCTCACCACGCTCAAAGTGCCCATGACGGACAAACCCGGAACCACAGTGAACTTCCGCAAACTGCTGCTCAACCGTTGTCAGAAGGAGTTTGAGCGGGACAAGGTGGATGATGTGGTGTTTGAAAGGAAACAGAAGGAACTTGACTCTGCACAGTCCAGTGATCAAGAGAGACTACGGTTAGAGCTGGAGGAGGCCAAGGACAAGGCCCGCCGGCGCTCCATAGGTAACATCAAGTTCATCGGGGAGCTGTTCAAGCTCAAGATGCTGACAGAGGCCATCATGCACGACTGCGTGGTCAAGCTGCTGAAGAACCATGACGAGGAATCGCTGGAGTGCCTTTGCAGGCTGCTCACCACCATCGGCAAGGACCTGGACTTTGAGAAGGCCAAGCCTCGCATGGATCAGTATTTCAACCAGATGGAGAAAATTGTTAAGGAGCGGAAGACATCATCTCGGATACGGTTTATGCTGCAGGACGTGATAGACCTCCGATTGCACAACTGGGTGTCCAGGAGAGCTGACCAGGGCCCTAAGACCATCGAGCAGATCCACAAAGAGGCCAAGattgaggagcaggaggagcagagGAAGGTGCACCAGCAGCTGCTCTCCAAGGACACCAAGAGAAGGCCAGagcaacaacagcagcagagagaacagcaaaGGGAGCAGCAAAGGGAGCAGCGTGTGCAACAGAGAGATGAGACCTGGAACACTGTGCCCATGACCAAGAACAGCAGGACAATCGACCCCACCAAGATCCCCAAGATCTCCAAGCCTCAGATGGATGAGAAGATCCAACTAGGACCACGAGCCTCACTCAACTGGATGAAGGGCAGCAGCGGAGGGGCCAAGGCTAGTGACTCCGAATTATCCcggtctggtggtggtggtgccagTTTAAACCGGTACTCTGCACTCCAGTCCACTCAATCTCATCAAACCACCCCACCGGCACAGAACCTAGAGTATGACACTAGAAGAACCTTGGGCAGTCGAAGCAGTGCAGGGAGAGAGCGAAGTGAGAAGCCCCTGAGCCCAGCTCCGTCGAGGCCCGGTTCCTTCGTCCGAGGCGGGAGTGCCAAGGAGCTTCTGGAGAGCCCGGCCCTGAGCCCTGAGGAGCCCCGCAGAGAGCTGGAGAGCCCCAGCGTAAGCGAGGACAAAACTGGGCCAGAGCGCAGCAGTGCCAGGGAGCCTGTGAAAGCAGAGCCTGTGGTGGCCCAGTCTCCAGACAGACCTGCCCTCtctgaggaggagatggagaggaagtcCAGAGCTATCATTGACGAGTTCTTGCACATCAACGATTATAAGGAGGCTGTACAGTGTGTGGATGAGCTGGACATGTCCTCTCAGCTccatgtgtttgtgcgtgtgggGGTGGAGTCCACTCTGGAGCGCAGTCAGATCACACGGGACCACATGGGCAAGCTCCTCTTCCAGTTGGTGCAGCAGGACATCCTGGCCAGGTCCCAATTCTTCAAAGGGTTTGCTGACACCCTTGAGCTGGCGGATGACATGGCCATTGACATTCCCCATATCTGGCTGTATCTGGCCGAGCTGCTCAGCCCTGTGCTGAGAGACAGGGGCTTCTCTATGAGAGAGCTCTTTAGTGAATTAAGCAAACCTTTACTTCCTGTGGGAAGAGCTGGGATCTTATTTTCTGAAATACTGCACATACTATGCAAACAAATGAGCCATAGGAAAGTGGGCACCTTGTGGAGAGAGTCGGGCCTCAGCTGGAGTGACTTCTTGCCAGAGGGAGAGGATGTCCAGGATTTCATCTCAGAGCAGAAGCTCCAGTTCACTGAGGCGGACTGCTCCAGCCATGAGGCAGCCCTCGCCACGACAGCACTGTCCCTTGTGGTGCTCAACCAGCAGCTAGAGAGACTGCTGCTGGAGGACATGGCCAGTGATGAGCAGATCTTTGACTGGGTAGAGGCAAATCTAGATGAATCTCAGATGAGCTCCTCTCCGTTCCTGAGAGCTCTGATGACGGCTGTGTGTAAGGCAGCGGTGAAAGATGAAAGTGCTTCCTGTCGAGTGGACGTAGCCATCATTCAGAGGAGATTGCCCGTATTACTCAAGTACCTTAACTCAGACACTGAGCGACAGCTTCAAGCACTTTATGCACTGCAGGCGCTGATAGTCACTTTGGATCAGCCTCCTAacCTGCTCCGGATGTTCTTTGATTGTCTGTATGATGAGGACGTCATCTCGGAGGATGCTTTTTACAAGTGGGAGACCAGCAAAGACCCAGCAGAGGAGCTGGGCAAGGGTGTGGCTCTCAagtctgtaacggctttcttcacCTGGCTGAGGGAAGCCGAGGAGGAGTCGGAGGATAATTGACAAGGGAGCAGGCGGCCGCTGTAAGCCCCCAGGACAAGAGGCCAGCTGTTGCTACATAGAATAACTGCATCTTCAtagcaaaacaaacagacaaacctACAAAATGAGCGCGGGCAGGACGACATGTTTACGGCTGGAATTTTTTCTGCGGTACGGTTCTGAGACTATTTTGAGTTTGAATTCCAACGGCTGAAGCACTAAATACCTGTATTATACATagaaaatatttttgttttaaatttTAACTTTTCTTTTGTTACTTTTTAAGAAGAGACTTAAAGATACATAGGTTCCAGACTCtttaatttattatttttttaaaggactGCAAATATGGAAGTTTATTTAACATTTGCAGATGCTCATAATGAGGAGAACATTGATGACGAATAGAAATAACAATATTATtaattataataacaataataaaattGTGAAATAAATAGCCTCCCTGGATTCCATGTTTGGTTGAAAACAGGGTAAAAAGTTATTTTGGGATGAAGGGGAAGGCAGAGAAAGGGTGGATGCACAGAGACAATTGACATTGTAAGACATCAGAGGTCAAAGGTTATCAGTAAATAACCACAGGGAGTGCACTCTGTGATATGTACATAAACCTCCcaagaggaagagatatgcattCAAGAAGCAATGCAAATCAGTCcacaaaataacatttaaatgAACGTgaataaacaacaatgaacaatgGATAAAATGCAAGATTAAAAAGAAAATGCCAAGGTTGCTAAACATGAAGTGCTTGTAATACTTAAGACCTACCGAGCAAATGAAAAGCTTGTAAATACATTAAagacaaaaaaagtatttaaaaaatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU708762 lncRNA downstream 45380 53590164 ~ 53591403 (-) True kif17
TU708641 lncRNA downstream 223595 53412930 ~ 53413188 (-) True G623018
TU708636 lncRNA downstream 225040 53406030 ~ 53411743 (-) True G623013
TU708580 lncRNA downstream 263402 53368443 ~ 53373381 (-) True LOC118965299
TU708611 lncRNA downstream 317077 53317862 ~ 53319706 (-) True G622991
TU708817 lncRNA upstream 31091 53735048 ~ 53737808 (-) False G623173
TU708815 lncRNA upstream 32307 53736264 ~ 53737808 (-) True G623173
TU708821 lncRNA upstream 37397 53741354 ~ 53748563 (-) True G623176
TU708822 lncRNA upstream 46952 53750909 ~ 53751186 (-) True G623177
TU708823 lncRNA upstream 47714 53751671 ~ 53751956 (-) True G623178
XM_021609711.2 mRNA downstream 505 53624264 ~ 53636278 (-) False LOC110527991
XM_021609712.2 mRNA downstream 505 53624264 ~ 53636278 (-) True LOC110527991
XM_021609714.2 mRNA downstream 6433 53624264 ~ 53630350 (-) False LOC110527991
XM_021609713.2 mRNA downstream 7227 53624264 ~ 53629556 (-) False LOC110527991
XM_021609724.2 mRNA downstream 12879 53613570 ~ 53623904 (-) True LOC110527994
XM_021609748.2 mRNA upstream 767 53704724 ~ 53719450 (-) False LOC110527997
XM_036983534.1 mRNA upstream 767 53704724 ~ 53719450 (-) False LOC110527997
XM_021609749.2 mRNA upstream 767 53704724 ~ 53732788 (-) True LOC110527997
XM_021609754.2 mRNA upstream 62109 53766066 ~ 53771880 (-) True LOC110527999
XM_021608275.2 mRNA upstream 70398 53774355 ~ 53775511 (-) True LOC110527121
TU708601 other downstream 313952 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 2678243 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 3330627 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 3700502 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 4339535 49295255 ~ 49297248 (-) True mustn1b
TU711185 other upstream 1368522 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 1460535 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 1729499 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 2987366 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 3130628 56834585 ~ 56835092 (-) True G627314

Expression Profile