RNA id: XM_036983886.1


Basic Information

Item Value
RNA id XM_036983886.1
length 3275
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC110529005
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 66931038 ~ 67049072 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAGCTGGCCCCGTCCGTTTAAACCGAGAACACCCATACCAACTTCTCAATGCAAAAATTAAAAGGGAACCTAGAAGCAGGGACTAGGGGAACGAAATGAGGTGTAAATAGAATACGAAagctcttggtctctctctctctccactctctcctctcttttagtaaatgaatgaatgaatgattaaTTAGGACATAAATAGGCTACACGGAATCACGCCTCCACCGGGACAAGAAAGCCTGCTCCAAGCTTTTGATATTCGTTTTAGCCCAATGAGACATATGTATATTTATTAATGTACATATTTGCATTGGTAGGACTACAAGCAGGACCAGCAAGGCtttttagactttttttttttaatcaataggCTACTTCGTTCGGAAGCTTCTATACAACGGCCACCAAGATTGCGCTGCTGCTGCCGCCGCTGTTATCACAACTCATTGCCGGTCCGAAGATGGCAACTTTAACAAATGGACAGGTGGACGGCACAAACGGGCTAGTGAACGGATTAAGCCACAGCCACAGTTCAGCGGGCTGCGGGGGCACCATCCCCATGAAGGACCACGACGCCATTAAACTGTTCATCGGGCAAATACCGCGCAACCTGGACGAGAAGGACCTCAGGCCGCTCTTCGAGGAGTTCGGCAAGATCTACGAGCTCACGGTACTCAAGGACCGCTTTACGGGCATGCACAAAGgCTGTGCCTTCCTTACCTACTGTACCAGAGAGTCGGCCCTGAAAGCTCAGAATGCCCTCCACGAGCAGAAGACCCTGCCAGGGatgAACAGGCCTATCCAGGTGAAGCCTGCGGACAGCGAGAGTCGAGGAGAAGACAGAAAACTCTTTGTGGGCATGCTCAACAAGCAGCAGTCTGAAGATGATGTGCGATGTCTCTTCGAGTCCTTCGGCAGCATTGAAGAGTGCACCATCCTTAGAGGTCCTGATGGAAACAGTAAAGgttgtgCGTTTGTAAAGTACTCCTCTCACGCTGAAGCTCAGGCAGCTATCAGTGCTCTACACGGCAGCCAGACAATGCCTGGTGCATCCTCAAGTCTGGTGGTGAAGTTTGCCGACACAGATAAGGAGCGCACGATCCGGCGCATGCAGCAGATGGCTGGTCAGATGGGTATTTTCAACCCCATGGCCCTGCAGTTTGGGGCCTACGGGGCCTATGCACAGGTGCAGCAGCAGCAGGCAGCGTTGATGGCGTCAGTAGGGCAGGGGGGCTACCTCAGCCCCATGGCAGCCTTTGCCGCTGCACAGATGCAGCACATGGCCACCATCAACGGCCTCCCAGGGGGGCACATGACCCCCACGTCAGGTGGCAGTACCCCCCCTGGTATTGGCGCCCCCACAGTGACCAGTATCCCCTCGCCCATCAGTGTGAATGGTTTCGCTGGGATGCCCCCCCATCAGACCAATGGGCAGCCCACTGCCGAAGCTGTGTATACCAACGGGATACACTCCTATCCTGTGTTACAGGAGGTGGTTTTTAGAGAGGACTCTGAGAAAAACGGTTTGGCTCAGCGGAGTTGTTTTGGAGTTCAGGGTGGctgcttcctctcttctctctctgaagCTCAGAGTCCCACTGCAGCAGATCACCTACAGCAGGCTTACACAGGAGTCCAGCAGTATGCAGcAGCCTACCCTGCTGCATATGGCCAGATCAGCCAGGCCTTTCCCCAGCCTCCTCCCATCATCCCACAACAGCAGAGAGAAgggCCGGAGGGCTGTAACCTGTTCATCTATCACCTCCCTCAGGAGTTTGGGGATGGCGAGCTGATGCAGATGTTCCTGCCTTTCGGTAATGTCATCTCCTCCAAAGTGTTTGTGGATCGGGCGACAAACCAAAGTAAATGCTTTGGATTTGTGAGCTTCGACAACCCAGGTAGTGCCCAGGCTGCCATCCAGTCAATGAACGGCTTTCAGATCGGCATGAAGAGACTCAAGGTGCAGCTCAAGAGGCCGAAGGACGCCAACCGCCCCTACTAGCCACTCCTAGCCACCCCTGCCCTGGGGGATAAGGCAGATGCTGCACACAGGGAAACACAGGTTTTTGTTGAGCTGGAACATATGTTGATTACATGAACAACGCCATTGAACTGACGGATCACCGGGACACAGGTATTCTTTGAGGCTGGTATGAAACTGGATCAGATACTGGGCTGAACATGAACAAATAGATGACCAAGTAACAGAAAATTCTGTTGGATGTACCTTTTGGACCTCAGAGAAAACTCCTGCAAGCCTGGGTAGCTCCAGGGCTCCGACTGTCTTTAtcgcctcccctcctctctctctctacctaaccACACCTGAACGACAGCTACCTTACAGGACCACAAGTGAGgaattataaataaaaaaaacacacggAACAGAGATGGAGGAAACATGGATAATAAGAGTTCCAAGAATTAAACAAACTTTGAAAATACTTTATGGGGGAATGCCATAGGATATCTCTATGTAAATGTGTTTGGGTATGGGGAAACAACTTTTTAAAGAACAATTTTACAGGACTAGAAACAAACGAAAAAATATGTTTCTCGGAAGAAAGAGAACTTTGTAGGGAAAGCGATATTTCATCTTTAGCTTGGAGTGCCTGTCTGTTTCCAGGGGACACCGTTGGCAAGGAGAGCCAGAGCAACGGTCTCCAGGGAGTCTTACCTGTCATTCCTTAGTTGTTTTAGGGACCAAAAGACCAAACATTTTTATTGCTGAGGACTTGTAGCTCTATTAATATACTCAGACCACTGTATCTCTTTTAAATCGCTGTTAACCGATTAAAGAGTTGCATTTAAaaggtgtacagtgtgtgtgtgtatatatatatatatatacatacatacacacacacacacaatacatgtatacatacatatatattgcTGATATGCTTTTTGAATACAGCCAAAACTATTTCCGATGCCGATGGGGTCGCTCACTTCACTAGTTTACAATTAACTTTTCAAAATGTTAATTTTTTCCCCCCTTCTCATTTTCTCTTGGGGGATGAAATGGAGAGTGCATGGGAAGGTTTGTTCCATATTGCAGCCTTACCTTTTCTAACATGAAATCCTAACCTCATAGTTAAAACAACATAATAATGTTTTGAAATATATGAACTTGTTTATATTtgcagtacatatacagtaccagtcaaaagtttggacacacctactcactgtagggtttttctttattcttactattttctacattgtagaataatagtgatgacatcaaaactatgaaataacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU725508 lncRNA upstream 46250 66884373 ~ 66884788 (+) True G638334
TU725496 lncRNA upstream 47947 66862885 ~ 66883091 (+) True G638322
TU725487 lncRNA upstream 73585 66857247 ~ 66857453 (+) True G638314
TU725456 lncRNA upstream 104177 66826578 ~ 66826861 (+) True G638283
TU725449 lncRNA upstream 108367 66822393 ~ 66822671 (+) True G638276
TU725654 lncRNA downstream 12820 67061892 ~ 67073060 (+) True G638461
TU725691 lncRNA downstream 52607 67101679 ~ 67101894 (+) True G638497
TU725698 lncRNA downstream 70248 67119320 ~ 67119756 (+) True G638504
TU725737 lncRNA downstream 130853 67179925 ~ 67180514 (+) True G638536
TU725734 lncRNA downstream 153019 67202091 ~ 67204994 (+) True G638534
XM_021610247.2 mRNA upstream 611831 66311011 ~ 66319207 (+) False myorg
XM_021610256.2 mRNA downstream 53030 67102102 ~ 67112227 (+) True LOC110528302
XM_021610257.2 mRNA downstream 73119 67122191 ~ 67130475 (+) True LOC110528303
XM_021610262.2 mRNA downstream 138804 67187876 ~ 67201857 (+) False LOC110528306
XM_036983897.1 mRNA downstream 151021 67200093 ~ 67201857 (+) False LOC110528306
XM_021610261.2 mRNA downstream 151030 67200102 ~ 67201857 (+) False LOC110528306
TU725180 other upstream 308944 66621686 ~ 66622094 (+) True G638011
TU725095 other upstream 323294 66552588 ~ 66607744 (+) True G637929
TU724056 other upstream 1023219 65904145 ~ 65907819 (+) True LOC110528281
TU722781 other upstream 1600746 65329936 ~ 65330292 (+) True G635848
TU722685 other upstream 1878882 65051644 ~ 65052156 (+) True G635769
TU725913 other downstream 391460 67440532 ~ 67443037 (+) False patz1
TU725911 other downstream 395234 67444306 ~ 67446077 (+) True patz1
TU727030 other downstream 1164446 68213518 ~ 68214402 (+) True G639648
TU727720 other downstream 1704991 68754063 ~ 68757046 (+) True LOC110528344
TU727965 other downstream 1872554 68921626 ~ 68927219 (+) True G640523

Expression Profile