RNA id: XM_036985408.1


Basic Information

Item Value
RNA id XM_036985408.1
length 7063
RNA type mRNA
GC content 0.47
exon number 39
gene id LOC110529235
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 36063537 ~ 36206480 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagacaagggaagagagagagagagagagagtgagtgtgtgagagggacagagagagggcgggagataCAGCAGCTGGAAGCAAGAGAGAAAATCCCAGCCCAGCAAGCATCATTTTTCACATCGGATTTAATCCGTTCTCGTCGACCACCAATTCACGTAAGGaacgTGGTCCAGTGGTGTCCTCCGCTCTCCAGTGTGCTGTCCTCCTCTTCCCAGTTCActgcccctctgtctgtctgGTGTGAGCAGCCATGACTAAGTCCTATGAGTTTAATTGGCAGAAGCACCTGCCTGGCTTCATGCAGGAAGGAGCTTCCTTCGACAGGTTTGACGAGGACCCGTTTCTGTTTGAGCCCAACTGTCTGGTCAAAGTGGACGAGTTTGGCTTCTTCATCACGTGGAAGAGCGACGGAAAGgaggGCCAGGTTCTAGAATGTTCTCTGATCAACAGTATTCGAGTCGGAGCCGTGCCAAGGgaCCCTAAGATTCTGTCTTCGTTCGAGGCAGcggggaagaaagaggaggagctggagggatgTGTCATCTGTGTCTGTAGCGGGACCGACCTCGTCAACCTCTCCTTCATGTACATGGTGGCTGACAGCCCAGACACAGCTAGGAAGTGGACGGAGGGTTTGAGGTCAGTGATCCACAATTTCAGAGCCAATAACGTCTGTCCTATGACCTGCCTCAAGAAACATTGGATGAGGATGTGCTTTCTGACCAATGTGAACGGCAAGATCCCAGTGAGAACCATCACACGGACATTTGCGTCTGGGAAAACAGAGAAAGGAATCTTTCAGGCTCTGAAGGAACTGGGGCTGCCTAGCGGGAAGAACGATGAGATAGAACACACGGCGTTCCCCTTCGACATCTTCTATGCCCTGACTCAGAAGATCTGCCCTCGTACTGACATCGAGGAGCTCTTCAAGAAAATCAATGGGGACAAAAGTGATTTTTTAAACGTAGACCAGTTAGTCAGCTTTCTGAATGAAAACCAGCGCGATCCGCGGCTAAATGAGATCCTGTTCCCCTTCTACGACCCTAAACGAGCCATGCAGATCATCGAGAAGTACGAGAGAGACCCCGACCTCAAGAAGAAAGGACGTATGTCCAGCGATGGCTTCTGCAGGTACCTGATGTCAGATGAGAATGCCCCGGTGTTCCTGGACTGTCTGGAGCTGTACCAGGACATGGAGCAGCCTCTGGCCCACTACTTCATTGCCTCGTCCCACAACACCTACCTGAACGGGAGGCAGTTCGGAGGGAAGTCCTCCGTGGAGATGTACAGACAGGTGCTGCTCTCCGgctgcagGTGTGTAGAGCTGGACTGCTGGGATGGGAAAGGAGAAGACCAGGAGCCTATCATCACtcatggcaaggccatgtgtacTGACATCCTCTTCAAGGACGTGATCTCAGCCATCAGGGAAACTGCCTTTGTGACGTCTGAGTATCCCGTGATCCTGTCATTTGAAAACCACTGCAGTAAACCCCAGCAGTATAAGATGGCTCGCTATTGTGAGGAGATCTTTGGAGAATACCTACTGAGGCATCCCCTTGAGGGATTCCCTGTTGAGGCGGGTCGTCCCTTGCCTTCTCCCAACGATCTCAAACGCAAAATCCTCATCAAAAACAAACGCTTGAAACCCGAGGTGGAACAGAaGCAGTTAGAGTCTTTTAAGAAGCACATGGAGGCAGGAGAGACCAACACACCAGCCATCTTACTAggagcagagacagaggaagatgtGGAGaacgCTCTGGGTGAGGTGAAGGATGTGATTCCTGACTTGAAGACGTGTACATCAGAGGAACCTAGTGAAGAGAACAGCCTCAGCACCAGTGTCAGTGTCAGCGACAGTGTCAGCGTGAGTGTGAACAAagacggagaggagagggagagggacaacagcATCAAAAAGgtggtggaggaggatccAACAGAGATGTCTGAGGCCACAGAAGCAACAGACGCCACAGACATCTCCGAGGCGTCTGAGGATAACAACAACAAGAAGACTGGCGAGACGACGGATGACGAGGAGGCTCTGATAGCCTCGTACACGTACGTAGGAGCCACCACCAACATCCACCCCTACCTCTCTGCCATGGTCAACTACGCACAGCCTGTCAAGTTCCAGAGCTTCGACGTCGCAGAAGAGAGGAACATCCACCACAACATGTCGTCATTTAATGAGTCAGTGGGTCTGGGTTATCTGAAGACCAACGCCATCGAGTTTGTCAACTACAACAAGCGTCAGATGAGTCGGATCTACCCTAAAGGAGGCAGGGTGGACTCCAGTAATTACATGCCTCAGATCTTCTGGAACGCAGGCTGCCAGATGGTCTCCCTTAACTACCAGACCCCAGATTTGGCCATGCAGTTGAACCAGGGAAAGTATGAGTACAATGGATCCTGTGGGTATCTGTTGAAGCCAGACTTCATGCGTCGCTCAGACAGGATGTTCGACCCCTTCTCAGAGACACCTGTGGACGGGGTCATTGCTGCTACCTGCAGTGTACAGGTGTTCTCTGGTCAGTTCCTGTCTGATAAGAAGATTGGGACCTACGTGGAGGTGGACATGTACGGGCTGCCCACGGACACCATCCGCAAAGAGTTCCGCACGCGCATGGTGATGAACAACGGCCTGAACCCCGCCTACAACGAAGAGCCTTTCGTCTTCCGGAAGgtGATTTTACCAGACCTGGCTGTGCTGCGCATAGCTGTGTATGATGACAATAATAAGCTGATAGGTCAGAGGATTCTGCCATTGGAGGGTCTACaggcaggatacagacacatCTCTCTACGCAACGAAGGGAACAAGCCTCTGTCTTTACCCACCGTCTTCTGCAACATAGTACTCAAGACCTACGTACCCGAAGGCTTCGGAGCCATCGTGGACGCCCTGTCGGACCCAAAGAAGTTCCTGTCCATAGCAGAGAAGAGAGCGGACCAGATGAGAGCTCTGGGGATTGAAACGAGTGACATAGCGGACGTGCCAAACGAGAGTTCGAAGAACGACAAGAAAGGGAAGGTGAACGCCAACGTGAAGACCAACGTCACGCCACAGACCAGCTCGGACCCGGCTCAGTCCTCTAAGTCTGCCCAGAACAACACCACGGAGACCAAGAAggATACAAACACCCTCGTGCCGCATGTGAACATTGATGACTTGAAACAGATGAAGACGTACCTTAAACTGACTAAGAAGCAGCAGAAAGATCTGAACTCTTTAAAGAAGAAGCACGCCAAGGACTGCACCATCATGCAGAAGTCCCACTGCAGCCAGGTGGACAAGATGATCGCTCTGCACGACAAGGAGAAGCAGACACAGGAGAAGCTGCTGGAGAAGGCCATCAAGAAACGAGGAGAAAACAACTGTCTAGAGTTGAAGAAGGAGACTGAGAGTAAAGTGGAGAACCTGACCACAGACCACAAGGCCAAGGTGAAGGACATCACAGCCCAACACACTAAGGAGTGGTCAGAGATGATCAACTCCCACAGCAGTATTGAGCAGGATATGAAGGACATCCACGTGGTCCAGCAGTGTGAAAACCTCAAGAAACTACTGAGTGGAGTCCAGGAACAACAGACTCTCTCGCTCAAACTGATCCACgaacgGCAGAGCAAGGAGATGCGGGCCAACCAGGCCAAGACGTCCATGGAGAACAGCAAGGCCATCAGCCAGGACAAGACCATCAAGAACAAGGCCGAGAGGGAAAGGAGAGTTAGAGAGTTGAACAGCAGCAACACCAAAAAGTTCCTTGAGGAGAGGAAAAGGtTGGCTATGAAGCAtcagaaggagatggagacacTGGAAAAGTCTCAGAAAGAACAGCTAGAGGAACTGGACAAGTTCAATGAGCAGCTTTTGAAATCACATCATGCCAATAAACAGTGTCAAGGCCAAGGACATCCAGCAGATGGTGAagctggaggaggagatggaccGCAGACCAGCCACAGTGGTTTAACCACTCCCAccacctgagacacacacagaaacacacacacacacactgcccagaCCAGCCACAGTGGTCTGAACACCCCCACTAgcacctgagacacacacacagacactgcccTCTCAAACAACtgacacagagacccagacacactcacacaccccactacacacacacacaccctagatTCCGCCTTTCATCCTCAACTGGCAATATTGTCATAGTTCATAATTCTCTATCCCTGTATTATCTCCCTCTGCAATGAACCACTTCCTACACAGGGTCTGTCCTCCCATCTCTGACCACTCTCGCAGTTACAGAGTTATCCCACGTGCTATTCCCAAACCTTGCCCTCCTTCACTCCAACCACTGAAAACCCCACTCTGAGACATCCCCAGCTCCCCTGTGCTGCGGAGCCATTGGTGCAGACCAGTGATTGACAGTAAGACGAGCGACTGCTTTTGGAAGGTGGACGGGACATCCGAAACATTGAGAGACACAACCAACCTTCATCCTTTCCATTTTTCCACCACTCTACCATTCCCGGATCTGCTTTTTATACACCTCCATccatcttttttttaaatctgtttttaATGGAAGCAATGTTTGCAGATATTATCAAAGTCACTGTACACATACATAACGATACAGacaacacaccttacacacacgtACTATCACGTCTGCTCTTTCTGTTGTCATGACGGCTCAAACCGAAGTTAACAGATCATGTTTTCTGTTCAAACTCTTTTAAgacttttattttgtatttttaatggTACCGGGTATCAATAACAGCACCAGAATATGGGACGGGGAAAATACCTATATATTAGTTATGAATTTTATGTCAGCACAAAATATGTGAATTATACTGTATGCTACACAAGAGTTGAAGTAATGTCCTGAGCACTTTATATGTGGTAGGCCATCATAACCGAATTGGAAAATGTAGCAGTGCACTAGGTTTCTCTGTGTTTTGAtaagaatgtaaaaaaaaaaaacaacaacaacaaaaaaaaagatgaaGACAAACGTTGGATGAACGGTGTTCGGAGAAAAACCCCAAACCCAACGTCAGGTAGTCCTTAACACTGCGGCTTGTCCTTCATGCACACTTTTTATTTCATCAGAATGTGTATTATAtgatttctccccccccccccaaccccaagAAACCTAAAGCCTACACCTGAGATTCTCACACCGCCAGAAGTGTATGCAGGGGGTATGACTGTATCGACCAGTTTTTCCTTCACTGGCCTCTCTAGCCACTTCAGAAATAACCAGTTAATGTATTGTACTTGTCAATGGCAAACGTAATAAGTTTTCATAAACTCCCAACGTGGACCTATTTTCAACAATCTATACACTACAATGTGTTTTCATAGACCCTTTGACTCCCGATAAGTACAGCAGCCTAATGTAAGTGAAACACCCATCTAGCTCTGCTTATTCCTCAGTAATGAAAACATTGTTTAAAATGGTGTGCGCTCTGAGATGCACTTCTGACTGTACCTCAGCTGCAATATAATCCCTGTACTGTTCTTGCCTGTGCCATAGCCAGGGCGATTAGGTATGGTAATAACAGGCTTATTACACGCTTATTACATGGTTTTTACATGCTTATTAATTCCCTTTACTGGCCTCTGAGCTAGCTGGCGACACATCCCTTAGCAGCTCAGAACAGTATGTTGTGCGGGCCTTTCTAGTTGATTTAATTTCAAATCAGATATTCCTGTGCCGTGTTATCGGTGATGAAGCATAGCTGTGTAGAAAAGCACTTCATTGGCTATCGGAGTGAATATCAAAACAGACCATGTCAGGACAGGAAGTACTAGTTTGTTGTTGTTTCTGGTTTTGTAGAGACAGTAAGGATGGACTTAACAGACGTTCATAGCTCGCTGTGTCTCAGCCATGATGACACAATGGAGTTGGATGAAGTTGCGCCTAACATCTGATCTAGGGTCAGATATAGTTTCATCCCACTTATGGTGAACGTTAGATTTGGGTAAAGGGTAGCCTAACCTCTGGCAGTGACAGTATTGGACAGGCGGCCATTTTAGTGAGAGGTGCATTGTGGGAGCGTTGTTATGAAGTAATCATGGGTACTGTAGTTTGTGTGCATATACTgtgtacacagacagacaaatgtGTGGTCAGGCATTCATACTGCATGGCATTACACTCGCAAAGATTGACCAAAACAGATATTACACAAAATACACAATAAGTGACAACAACCCCTACGGATTTTTGTACTTTTAAACGTTCTGCTGTATAATTCTGCTGTAGTTTTACTCAACTGGTGTAGAGAGAGTATTGTATATATGGGAATGTATGTAGTTAATTACTTTTGACCAAAAAGGTGTTCACCGGTGACCCTGTCAATCAAGGGCTGGGGAATAGTGCACTTCTGTTGGTTTCTGGGAAAGACAATTATCAACCCCTGtcctctttcttttcctctcgtcttttctgtttcagtccatttcattatctctcgctctctctctagcaccTCACACTACATGGAACGAACCCTCTCGCCACATATCTAGTGCAGAATTacgagtttaaaaaaaatgtaaaagtgcTTTTATATTTTATTCCATTGCTTTCATATGTGCCACTCAATGTCTGCTAGGACGTTTAAATTATTTTACGAATGATAAATGCCAAAATAAGGGGTTATttatataaaggtatataaatatatatatattatatattaaataTAGTGTGTAGTTTAAGACGATATGTTTTTTGCACTAGTTGAATGTTTCTGTTATGTGTGACCTGTACGACATGTAACCTCTTGCTCTCTAGTTTGTTGAGAAAGCAGATTCTTTTCGCTGAACAATGTCGCCTTTTCATTTCCTTTACGATTTGTATATCctctttttttttctattttgaCTGTAGCTTTGTCGACATACAGACCATCCTGTGAGTGTTTTTGTATTTATATCGTAGGCCTACTGTCGAACTTATAGCAATGAAAATACTGTTGTTACCCTGTTCCTTTAATACTGTTTTATAGTATGTGTACCAATAAACTATCCAGGTGTAAAATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU798753 lncRNA downstream 11716 36051514 ~ 36051821 (-) True G702039
TU798740 lncRNA downstream 36081 36027256 ~ 36027456 (-) True G702026
TU798734 lncRNA downstream 43433 36019893 ~ 36020104 (-) True G702020
TU798731 lncRNA downstream 47347 36015875 ~ 36016190 (-) True G702017
TU798728 lncRNA downstream 53681 36009492 ~ 36009856 (-) True G702014
TU798872 lncRNA upstream 17952 36224432 ~ 36224789 (-) True G702145
TU798889 lncRNA upstream 22695 36229175 ~ 36233884 (-) True G702149
TU798901 lncRNA upstream 52888 36259368 ~ 36259824 (-) True G702161
TU799036 lncRNA upstream 277228 36483708 ~ 36485467 (-) True G702295
TU799851 lncRNA upstream 333011 36539491 ~ 36575984 (-) True G703062
XM_036985403.1 mRNA downstream 4166 36052936 ~ 36059371 (-) True LOC110529870
XM_036985404.1 mRNA downstream 5175 36052936 ~ 36058362 (-) False LOC110529870
XM_036985399.1 mRNA downstream 142631 35916240 ~ 35920906 (-) False LOC110529868
XM_036985400.1 mRNA downstream 142631 35916240 ~ 35920906 (-) True LOC110529868
XM_036985398.1 mRNA downstream 144318 35916240 ~ 35919219 (-) False LOC110529868
XM_036985414.1 mRNA upstream 9754 36216234 ~ 36490733 (-) False LOC110529236
XM_036985413.1 mRNA upstream 9754 36216234 ~ 36490735 (-) False LOC110529236
XM_036985415.1 mRNA upstream 9754 36216234 ~ 36490736 (-) False LOC110529236
XR_005052868.1 mRNA upstream 55075 36261555 ~ 36490738 (-) True LOC110529236
XM_021612508.2 mRNA upstream 337335 36543815 ~ 36552132 (-) True LOC110529872
TU798300 other downstream 145362 35900623 ~ 35918175 (-) True G701618
TU798297 other downstream 159265 35900623 ~ 35904272 (-) False G701618
TU798046 other downstream 358224 35641355 ~ 35705313 (-) True LOC110529865
TU798044 other downstream 375901 35641355 ~ 35687636 (-) False LOC110529865
TU800348 other upstream 1148616 37355096 ~ 37361593 (-) True LOC110529880
TU800488 other upstream 1282747 37489227 ~ 37492157 (-) True LOC110530908
TU801610 other upstream 1831245 38037725 ~ 38038346 (-) True G704702
TU801790 other upstream 2107009 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 3013164 39219644 ~ 39226313 (-) True G706683

Expression Profile