RNA id: XM_036985414.1


Basic Information

Item Value
RNA id XM_036985414.1
length 5040
RNA type mRNA
GC content 0.50
exon number 33
gene id LOC110529236
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 36216234 ~ 36490738 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATCAGCCGTCATCAGCGGACTTCACCCAGTCCCTCAGCTGAGCCTGCTTTCTCGTCCAACTCGCGTCAGGGAGCTTCAAAGCGGAGACCCGCAGCCCCATGCTGGAATGAGATACTGCCAACACTAGTGGAGCTTCCATCAGCCTATCGTTCCTCAGCAGAAGGGTCGTTTCGGAAAGAAAAAGGAGAAAGCGACTTAAAaccgtttattttatttttgtcgGTTGAGGAGAGTAGATGAGTCAATGGCCGGGGCTCAGCCAGGAGTTCATGCGCTGCAGCTCAAGCCGGTGTCCGTGAGCGAGAGCCTGAGAAAGGGCAGCAAATTCATGAAATGGGATGATGACTCCACTACGGTGACCCCTGTGACCTTACGAGTCGACCCCCAGGGCTACTTCCTGTACTGGACTGACCAGAACAAGGACACTGATCTCCTGGACATCGCCTATATCAAGGATGCCAGGAACGGAAAATGCACCAAGACGCCAAAGGACATGAAGCTACGAGAGCTGCTGGACGTCAGCACCCTGGTGGGGAAGATGGAGAACCGGATGCTGACGGTGGTGAGCGGACCAGACATGGTCAACATCACCTACCTCAACTTCATGGCCTTCCAGGAGGAGATCGCCAAGGAGTGGGCTGAAGAGTTGTTTGGCCTGGCGTCTAACCTACTGGCGCAGAACATGTCCAGAGAAGCATGCCTGGAGAAAGCATACACACGGCTGAAGCTACAACTTAACTCAGAGGGATGCATCCCGGTCAAAaaTATCTTCAGGATGTTCTCGGCGGACAGGAAACGAGTGGAGACAGCTCTGGAGAACTGCAACCTCCCTTCTGGACGGagtgaCTCTATCCCTCAAGAGGACTTCACTCCGGAGGTCTACAAAGTGTTCCTCACCAACATATGTCCTCGACCAGAGCTAGACAACATCTTCTCTGACGTTGGAGCTAAAAGCAAACCCTACCTGACAGTGGAGCAGCTGACTGAGTTTATAAACGTCCGACAGAGAGACCCTCGTCTCAACGagatcctctaccctcctctcaaACCGGAACAGGTTCAGAGCCTGGTGGAGAAGTACGAACCCAAAGAACTGCTGGTGCAGAAAGGTCAGATCTCAGTGGAGGGCTTCGCCAAGTATCTGAGTAGTGAAGAGAACAGCATCATCCCACCAGAGAAGCTGGACCAGAGTGAAGACATGACCTTACCGCTGTCTCATTACTTCATCAACTCCTCCCACAATACATACCTCACAGcgggcCAGCTGGCAGGTAACTCGTCGGTGGAGATGTACCGCCAGGTCCTCCTGTCAGGGTGTCGCTGTATCGAGTTGGACTGCTGGAAGGGACGCACCACCGAAGAAGAACCTGTCATCACACACGGATTCACCATGACAACTGAAATCTCCTTCAagGAAGTGATTGAGGCCATAGCAGAGTGTGCCTTCAAGACCTCCCCTTTCCCTGTCATCCTCTCCTTTGAGAACCACGTGGACTCGCCCAAGCAGCAGGCCAAGATGGCGGAGTACTGCAGATCAATATTTGGAGACATGTTACTGACCGACCCTCTGGAGAAGTACCCTTTGGAACCAGGTGTGCACCTGCCCAGTCCTATGGATCTGACGGGAAAGATTCTGGTGAAGAACAAGAAGAAACACATCAAGACGTCGAGCACCAAGAAGAAACTGTCAGAGCAGGCCTCCAACACGTACAGCGACTCATCCAGTGTGCATGAGCCTTCTTCTCCCAGCACAGGGTCGGCCAACCAGGAGATGACCGAGTCCTCCCAGCCTCTAGAGGTCGCTGagctcagcctccgaccacagGGCAGGAAGTCCATTGGTGAAGTTGAGGCAGAgagtgacgatgatgatgatgacgatgatgactgCAAGAAGGGGTCCATGGATGAGGGTACAGCGGGCAGCGAGGCGTTTGCCACAGAGGAGATGTCCAACCTGGTCAGTTATGTCCAGCCAGTCAAATTTAACTCTTTCGAGGCCTCCAAAAAGATCAATCGGAGCTACCAGATGTCATCGTTCGTGGAGACCAAAGCCTTGGAGCAACTCACCAAGTCACCTGTGGAGTTTGTCGAGTATAACAAGCTGCAGCTGAGTCGTATCTATCCTAAAGGCACCAGAGTAGACTCCTCCAACTATAACCCTCAGCTCTTCTGGAATGCAGGCTGTCAACTGGTGGCCCTGAACTTccagaccatagaccTGTCCATGATGTTAAACCTTGGCATGTATGAGTACAACGGGAAGTGTGGCTACAGGCTGAAACCAGAGTTCATGAGACGACCGGACAAACACTTTGACCCCTTCGCTGAGAGCACTGTGGACGGCATCGTAGCCAACACGCTGTCTGTCAAGATCATCTCAGGCCAGTTTCTGACCGATAAGAAGGTGGGGACGTATGTGGAGATAGATATGTTTGGTCTGCCGGTGGACACCAGAAGGAAGGGTTTTAAGACCAAGACGTCTCAGGGCAACGCTGTCAACCCTGTCTGGGAGGAGGAGGCCTTCACACTCAAGAAGGTGGTTCTGCCCACTCTGGCCTCGATGAGGATTTCTGTGTTTGAGGATGGAGGGAAGTTCATTGGCCATCGCATCATTCCTGTGAATGCCATCCGCCCAGgttaCCACTACATTGGTCTGAGGAAtgagaagaaccaggctctgaCCCTCCCTGCTCTGTTTGTCTATGTAGAGGTCAAGGACTATGTCCCTGATACATTCGCAGATGTCATCGAGGCGTTGTCCAATCCCATCCGTTACGTCAACCTGATGGAGCAGAGAGCCAATCAACTGGCAGCTCTCACTctggaggagggagcagaggaggaggacagcaaaGAGGTCGATGCGGGTGGTGATGACCCCATGGAGCCTGACCCCCGGGTGACCGTGCCCGCAGAGAACGGAGTCAACCACGCCCCCTTCATCGCCCCCAAACCCCCCAGCCTTGTTAGCCACCAGCAACAGCCCACAGGTTCAGTGAAACCAGCAGTGAAGACTGAGGATGTAATCCAGAGTGTTCTTACAGAGATGGAGGCCCAGACCCTGGAGGAGTTGAAGCAGCAGAAGGGCTTTGTGAGGGAGCAGAGGAAGCAGTATAAAGAGATGAAGGAGTTGGTCAGGAAACACCACCGCAAGACCGGCGAGCTGATCAAGGAGCACACGGCCAGGGCTGCAGAGCTGCAGAACCAGCACCAGCGCAGGCGCTCCGCGCTGCAGAAGAGCCACAAACGAGACGGTAAGAAAAGgtcGGAGCAGTGTCTGTCGTCCCTGGAGCAGgagctgtgtgtgttggaccaggaGTCCAGTCAGAGACTCTCTGAGCTCAaggagcagcagcaacaacagctaCTCACACTGAGACAGGAGCAGTATTACAGCGAGAAGTACCAGAAGAAAGAACACATCaaaatgCTGGTGGAGAAGTTGACAACCATAGCAGAGGAATGTCAGAGTGCCCAGTTGAAGAAGATCCGAGACATCTGTGAcaaGGAAAAGAAAGACCTGAAGAAGAAGATGGACAAGAAAAGACAGGAGAAGATTAATGAAGCCAAGGCCAACAACAAGAACGTGACAGAAGAAGAGAAGCTGGAAATCAACAGGTCGTTTGTCAATGAGGTGGTGCAGTATATCAAACGGttGGAGGATGCTCAGAGTAAGAGAATGGAGAGGCTACTGGAGAAGCAGAACGACATCCGACAACAGATTATGGATGAGAAACCTAAGCTGCAGACCGAGCTGGACCAGGAGTACCAGGACAAGTTCAGACGGTTGCCCCTAGAGATCCAGGAGTTTGTCCAGGACAGCAGCAAGGCCAAGCTTAGCGACGACAGTACCCATggcaacctgtctgtctcctcgACGACCGAGAGGCTCAACCACAAAGCGTCCCAGTCAGAGGATGATACAGAAGACTCGTCGGAAAGAGTGTTTGACACACCCCTTTAAGACAAATCTGAAatgacacccttttccctatatagtgcagtacttttggccGGAGCCTCATATAAAGACtgtccaaaagtagtgcactatataggaaataggctTTAGAGACGAAACCTCATTAGagactaaaccctccccttcctCTGAATTGGACAGTTCTGGTTGGTCGTTCGAGGTGAAAATTGCCATTCTAGGGACAGATTACCCTGCGCTAACTCCTGACCTGAACCAGTATGGGGGTTAAACAATATCTGACCATGGACCAGTAATAGGGAGTACCTACTCTGTAGTTCTATTCAGATATGTAAATACttgttttgtatttgtgtgtttttgttgttttgctcCGGGGCGGTGCAGACACAGGATACGTGTATGTGTGACTCGGCACTAACTATGCGCAGGAACTAAGTTACATACTTGAACCATTGCACAGACAGAAtcatttcttaaaaaaaaaaaaaaatgtttttaatgtgtTCCTACTTTTTAAAAAGGACAATGTATTAGGTCTTAGATTACGTTCTCACAATGCTGACTATAGTGTAGGTCAGTCAGCGGTGCCAATGTTTTGATTTCACTGTGCACTTAGAGAATAGTTATGAGTATCATTGATTTGACATTGGTTAAGACCAGGGCAATGTTGAATTTGTAACGTACAATGGCACTGCAATGTAAAGTGATTGCATTGCAAGCCCCAAATAAAGTCCAGGCATAGCAAGTCAATTTCAACTTCCTGTCCAACCACTGTGGACACAGCCTTCATTTTCTTTATTGAAAAGTACGAATCGCTCCTAATTTATATTTTGCACTGAAGGCTTTCTACAGAACTAACTCTTCTGTTCTATCGTCGCCACCAAGCACTGGAGGCTTGCTGGTTCTATTTCGTCCTCACAAAAGTAAGCCTACTCTGTGTTGCTGCTACCTTGTTTTAATACTATTTTGCTTTGTAAGATATATTGGCCTGGTCGAGACGTACTTATTTTATCGTTTTGATTTTCTCATTTTTGTAATGCTTTTGACACGTTAGCGTTTAGATTGTTTATGGTTAATCCTGccgtggagggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU798775 lncRNA downstream 114044 36101349 ~ 36102190 (-) True G702056
TU798753 lncRNA downstream 164413 36051514 ~ 36051821 (-) True G702039
TU798740 lncRNA downstream 188778 36027256 ~ 36027456 (-) True G702026
TU798734 lncRNA downstream 196130 36019893 ~ 36020104 (-) True G702020
TU798731 lncRNA downstream 200044 36015875 ~ 36016190 (-) True G702017
TU799851 lncRNA upstream 48758 36539491 ~ 36575984 (-) True G703062
TU799909 lncRNA upstream 146499 36637232 ~ 36699970 (-) True G703117
TU799877 lncRNA upstream 152587 36643320 ~ 36644736 (-) True G703087
TU799939 lncRNA upstream 219893 36710626 ~ 36710921 (-) True G703147
TU799947 lncRNA upstream 228363 36719096 ~ 36719296 (-) True G703155
XM_036985405.1 mRNA downstream 9754 36063537 ~ 36206480 (-) False LOC110529235
XM_036985406.1 mRNA downstream 9754 36063537 ~ 36206480 (-) False LOC110529235
XM_036985407.1 mRNA downstream 9754 36063537 ~ 36206480 (-) False LOC110529235
XM_036985408.1 mRNA downstream 9754 36063537 ~ 36206480 (-) False LOC110529235
XM_036985409.1 mRNA downstream 9754 36063537 ~ 36206480 (-) False LOC110529235
XM_021612508.2 mRNA upstream 53082 36543815 ~ 36552132 (-) True LOC110529872
XM_021612513.2 mRNA upstream 128368 36619101 ~ 36625881 (-) False LOC110529875
XM_021612511.2 mRNA upstream 128368 36619101 ~ 36626061 (-) False LOC110529875
XM_021612512.2 mRNA upstream 128368 36619101 ~ 36626061 (-) True LOC110529875
trnaa-ugc-26 mRNA upstream 165832 36656565 ~ 36656638 (-) True trnaa-ugc-26
TU798300 other downstream 298059 35900623 ~ 35918175 (-) True G701618
TU798297 other downstream 311962 35900623 ~ 35904272 (-) False G701618
TU798046 other downstream 510921 35641355 ~ 35705313 (-) True LOC110529865
TU798044 other downstream 528598 35641355 ~ 35687636 (-) False LOC110529865
TU800348 other upstream 864363 37355096 ~ 37361593 (-) True LOC110529880
TU800488 other upstream 998494 37489227 ~ 37492157 (-) True LOC110530908
TU801610 other upstream 1546992 38037725 ~ 38038346 (-) True G704702
TU801790 other upstream 1822756 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 2728911 39219644 ~ 39226313 (-) True G706683

Expression Profile