RNA id: TU799877



Basic Information


Item Value
RNA id TU799877
length 1191
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G703087
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 36643320 ~ 36644736 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGCGCTAGGATAGACAAGGGGGAGAAGCTTGCGTCCCGTGCTCAAATCCAAGCTCAGCTTATAGCCAGCTGGCAGAGCTCCAGGCATGGACACTCTCCTCTGAGCATTACGGAAAAACTGCACTGAAGTGAGCTAGAGGGGATCAACACAGATGTGGGGAAAGTGAGCTAAATAACCCACAAATGATCTTAAAAACGGCTGTAGCGTAGCTAACCTCATGCTTTCTAACGTTACTTGAATTTTAATGGGCCAAAACACAATCAAATAGGGCACTTCTTTAATATGTCCGATTACTTCACACGCTGACCGTACATAAAAAAGATGAGCTCACCTTTGACTCCAGGAAGTGGCCTTTGAAGTAACGATAGGTTGGCACAGCACCTCTGGGCACACTGACGGTCCTCTTCCACAATGCCATCGTGTTCAACCGGTTGTAGGGTCACAGCTCTTTGATGGCACCAGCCTCCTAAAGCTTCACAGCTACCAACCACAGCTATCACCTCACCTAGTCATACACCATATTATTACATTCAATTAAACAAGTCATAACTGTTTacattcaccacacacacactctctctctctctctcatcaggcTCTAATGATCAAGTGCTTTTCAGCTAAACTCTCATGGACAAACTACGTAAATCGAGAATCTGACCAAATTAATCAAGATTTTAGTTCCGGGTCAGGTAACTGAGATGAACTAAAAGCTGACATTCCTGACTGTCTGGTTCGTTGTCAATCTTTCTGTCTAAAGTTGTCTTGAATTGAATAGTCTTCTTGTTTCAGATGAGTCTGCTGCCCTGCAGTAGGGGTTGGTCTTACCTGGGGATGTGTCTCCCCTAACTGCCAAAGTCACTTGAGTTGTCTCCATAGTTGACACAGGCACAAACAAGGACAATTGCAGGCGCAATCAAGCTGGAAAACCAGGAACTTAATGGTAAAACAGGCATAAATTTAGTGGATTAACAAAGCTGTGCTGGGTAGTAGAACCTCTATGACTGGACCAGAATATGGCCTTGGATATTCAACATCTCCTGTAAAGCCAGATTCTGGTTCAAtctatgacaacaaaaaaaaaagtgcccACAACCACTCGGACTAGCTAGTTCGCTACTAAGATAACAGATCAAAAGCTAGTATTAGAGCAGCCAAGACTGATGTATCTATAGAACTCGACAGTTTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU799851 lncRNA downstream 67336 36539491 ~ 36575984 (-) True G703062
TU799036 lncRNA downstream 157853 36483708 ~ 36485467 (-) True G702295
TU798901 lncRNA downstream 383496 36259368 ~ 36259824 (-) True G702161
TU798889 lncRNA downstream 409436 36229175 ~ 36233884 (-) True G702149
TU798872 lncRNA downstream 418531 36224432 ~ 36224789 (-) True G702145
TU799939 lncRNA upstream 65890 36710626 ~ 36710921 (-) True G703147
TU799947 lncRNA upstream 74360 36719096 ~ 36719296 (-) True G703155
TU799977 lncRNA upstream 117469 36762205 ~ 36767971 (-) False G703179
TU799978 lncRNA upstream 120898 36765634 ~ 36767971 (-) True G703179
TU799997 lncRNA upstream 134108 36778844 ~ 36779547 (-) True G703198
XM_021612511.2 mRNA downstream 17259 36619101 ~ 36626061 (-) False LOC110529875
XM_021612512.2 mRNA downstream 17259 36619101 ~ 36626061 (-) True LOC110529875
XM_021612513.2 mRNA downstream 17439 36619101 ~ 36625881 (-) False LOC110529875
XM_021612508.2 mRNA downstream 91188 36543815 ~ 36552132 (-) True LOC110529872
XR_005052868.1 mRNA downstream 152582 36261555 ~ 36490738 (-) True LOC110529236
trnaa-ugc-26 mRNA upstream 11829 36656565 ~ 36656638 (-) True trnaa-ugc-26
XM_021612520.2 mRNA upstream 29944 36674680 ~ 36682338 (-) True gzf1
XM_036985427.1 mRNA upstream 504587 37149323 ~ 37271103 (-) False LOC110529879
XR_005052870.1 mRNA upstream 504587 37149323 ~ 37271103 (-) False LOC110529879
XR_005052871.1 mRNA upstream 504587 37149323 ~ 37271103 (-) False LOC110529879
TU798300 other downstream 725145 35900623 ~ 35918175 (-) True G701618
TU798297 other downstream 739048 35900623 ~ 35904272 (-) False G701618
TU798046 other downstream 938007 35641355 ~ 35705313 (-) True LOC110529865
TU798044 other downstream 955684 35641355 ~ 35687636 (-) False LOC110529865
TU800348 other upstream 710360 37355096 ~ 37361593 (-) True LOC110529880
TU800488 other upstream 844491 37489227 ~ 37492157 (-) True LOC110530908
TU801610 other upstream 1392989 38037725 ~ 38038346 (-) True G704702
TU801790 other upstream 1668753 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 2574908 39219644 ~ 39226313 (-) True G706683

Expression Profile