RNA id: TU799977


Basic Information

Item Value
RNA id TU799977
length 2494
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G703179
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 36762205 ~ 36767971 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAGTTCACAATTTATTTACTGAATAAATTTGGACAAAACACCAAAATCTGTTACATTTTACAATCAGAACATCCGAGGCAGAATTCCCACCATGCACCACTTCCCTCCAAAACAAAAAGACTCCTTGAACATTAGCACCAAATCAGCACTAAACGCAAATATGGGCAGCTCATTCTACGAAACAAAAATAAAAGCAATAGTCAGTTTTTAAAAGCGACTCAAAATAGCAAATTTCTGATAAAATGTTCACTTGTGTTTTTACTTTTATAAAAACAAGCTTGTTTTTGTTTGACCCTGCTAGGCAGGCAATAGCATTCATAGGGCACATGCCGAGGACTAGTTAATAAAAACACAAATTCAAGTAACATTGAGATACGACAGAACATGTCCACTGGTACCCATTCAGAACAGGACAGTTTCACAGGACCTACGCAGGCAGAAGAAAATCAACATGGGCTACTGCAGACCATGTTACTGTGATGGTATCTTTTAATAATTGGTTTCAAgttcaaaataaaatatattaagGGTGACTGAAGTCGGCATGGGTGGTGGGGGCACAGAAATACTGGCACAAAAGTTGAATTGTTTTTTTCTAAAAACTTCGGACAGCCTTTTCCCCATCGCACCTGTCCTGTGTCCAAAATATTGCCTACAAATACATACATGTAAAAGGAATCTCtggaaaaaagaaaaaccctgcaatgtttttttaaatatatatatatatatatttatatgtatatagttGATGTTACAATTTAAATAAAACGTAACGTTTTCCGTTCCTACAAATGAAAAGCTAAACTTAAATAGAGAAAGCGCATCTAGAGCGGTGAAAACGATCGTTCACCGAGCCTAAACAAATCAAGTGCATGATGCAACTGGTGAAGaggttacaaATGAAGGTTAAGGAGAAGATATGAAAGCAGCAGTAACAACTGAATGGAATAGCTTAACACAACAAGGTGATATCAAACTTAAAACCTAGCCTTATTAATTCATGATAAATGAATGGTGGTGGaacagttattttttatttttaagaaatgcACACAATAAGTGGGGAAGAGGAATAAGGCTACACAGAAAAAGATGATGAAGCACACAGGTTTCTGAAGACGGGTACGTACAATAATTGAGTAACTATCCGTCTTCTATGTCAGTAAGAGCTTTATAACCTAGGGTCAATGGTCATGTTAGGTAATGAGAGACAAACAATGAATGAGCAACCAAAAATGAGGTCATCTGTCCTGATGATTGTTCGAAACAGAGTAGGTAGAAGTTGGCCCTAATCACTGGTCCAGGGTCAGATATTGTTTTAATCTTCCTAATAATGGTTTAGGATTGTGTTGGGttatctgatcttagatctgtggTTAGTGGGAAATTTATACCTGGTCATGTGAAAACTCAGAGGAGTGTAGTAGCAGTTTGACTGACTGACATGTGTCTTGTTCTCCTTGGCTGAGGTTTTGTGTCCCTTCGTGCTTGCTGTAGCGTCACAACATGTTGTATGTATCTACTTTTAAAAGCACCAcgaaaagaaaaaaaagattaTGTTTGCTACATTGTTTGCGACTTGCATGTCTAGTGGCGGCAACTCCTCTTAACAGAAGTCCCGCCCCCGTGATGTTTGTGAGCCATTCACCACCTGGCTCCGCCTCGAGGTTGGTTTTCCATGGAATGGAAAGGAAAAAAAGATGGAAACACCTTTTCTGTGAGTGACAATGTTTCACCTGCTAAACAACTAATCTACCGTTAGGCTCTTTCTGAGCGTGTCGCATTTGTTCCACGTTGTGGGGTAGTCCTCCCTTTgtgcttcctgtttcctgtctgCTCAGCTGAAGAACTGATCCAGCTCCTCCTCCATGTTCACCTCGGGCACAGTCTGctcctgctccctctcccctctcccctggaCCACAGCGCCGCCTGCTGCCCCGGAGGATAAGAACCAGGGGTGCTCCAGGATCTCCCGGGAAGTGAGGCGCTCTGCGGGCTCCCGGCGGAGGATACTCCGGATCAGACACTTGGCCTTGGGCGTCAGGGTCTCTGGGATGCTGAAGTGGCCCCGGCGGATCTTACTGAACAGGGAGCCGGGCTCTACGTCGTGGAAGGGGTAGCGGCCCACCAGGATGGTGTAGAGCATGACGCCCAGGGACCAGACGTCGGCCGCCTTGCCCGAGTAGCTGCCGCTGGCGTTGAGGATCTCGGGGCTGACGTAGGCGGGGCAGCCATGTTTGTCTGACAGAGAGTCGTCATGGCAATGCGCCACAGCCGAGGCTATCTGACGGAAGAGTCTGGCGGCCTCGTCCTCGCGTAGCTTCTTGCAGGTGCGGACGAAGGAGTGCATGTCTCCGTGGCTCCTCTCGAAGAAGACGTAGGCCCGCTTCTCCCCCAGCAGGACCTCCACCACCTGGTTGATGTGCTCATGTCTGCCCAGGGCGAAGTAGGCCGCCAGGGACTCCTGGTAGCGGCCTATCTCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU799947 lncRNA downstream 42909 36719096 ~ 36719296 (-) True G703155
TU799939 lncRNA downstream 51284 36710626 ~ 36710921 (-) True G703147
TU799909 lncRNA downstream 62235 36637232 ~ 36699970 (-) True G703117
TU799877 lncRNA downstream 117469 36643320 ~ 36644736 (-) True G703087
TU799851 lncRNA downstream 186221 36539491 ~ 36575984 (-) True G703062
TU799997 lncRNA upstream 10873 36778844 ~ 36779547 (-) True G703198
TU800106 lncRNA upstream 164065 36932036 ~ 36932240 (-) True G703301
TU800200 lncRNA upstream 290601 37058572 ~ 37059267 (-) True G703387
TU800223 lncRNA upstream 380331 37148302 ~ 37149108 (-) True G703407
TU800221 lncRNA upstream 381357 37149328 ~ 37152716 (-) True LOC110529879
XM_021612520.2 mRNA downstream 79867 36674680 ~ 36682338 (-) True gzf1
trnaa-ugc-26 mRNA downstream 105567 36656565 ~ 36656638 (-) True trnaa-ugc-26
XM_021612511.2 mRNA downstream 136144 36619101 ~ 36626061 (-) False LOC110529875
XM_021612512.2 mRNA downstream 136144 36619101 ~ 36626061 (-) True LOC110529875
XM_021612513.2 mRNA downstream 136324 36619101 ~ 36625881 (-) False LOC110529875
XM_036985427.1 mRNA upstream 381352 37149323 ~ 37271103 (-) False LOC110529879
XR_005052870.1 mRNA upstream 381352 37149323 ~ 37271103 (-) False LOC110529879
XR_005052871.1 mRNA upstream 381352 37149323 ~ 37271103 (-) False LOC110529879
XR_005052873.1 mRNA upstream 381352 37149323 ~ 37271260 (-) False LOC110529879
XR_005052872.1 mRNA upstream 384536 37152507 ~ 37271103 (-) False LOC110529879
TU798300 other downstream 844030 35900623 ~ 35918175 (-) True G701618
TU798297 other downstream 857933 35900623 ~ 35904272 (-) False G701618
TU798046 other downstream 1056892 35641355 ~ 35705313 (-) True LOC110529865
TU798044 other downstream 1074569 35641355 ~ 35687636 (-) False LOC110529865
TU800348 other upstream 587125 37355096 ~ 37361593 (-) True LOC110529880
TU800488 other upstream 721256 37489227 ~ 37492157 (-) True LOC110530908
TU801610 other upstream 1269754 38037725 ~ 38038346 (-) True G704702
TU801790 other upstream 1545518 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 2451673 39219644 ~ 39226313 (-) True G706683

Expression Profile