RNA id: XM_021612540.2


Basic Information

Item Value
RNA id XM_021612540.2
length 1646
RNA type mRNA
GC content 0.45
exon number 5
gene id sod2
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37782174 ~ 37792728 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGAATTTCAAGGGCAGTTCTACTTCTATTCTGAACGGTGTACAGTGGATACGGTGTGAAGAAACATGAGCATGCTAAGCAGAGTGGGTCAAGTCCGCAGGTGTGCTGCCACCGTGACCCCAGTCCTGGGCATGGTGGCAGCCAGATGGAAGCACTCGCTCCCTGACCTGACCTACGACTATGGAGCCCTGGAGCCTCACATCAACGCAGAGATCATGCAGCTCCACCACAGCAAGCACCACGCCACCTATGTTAACAACCTCAACGTCACAGAGGAGAAGTACCAGGAGGCACTGGCCAAAGGTGATGTGACAGCACAGGTTTCTCTCCAGCCTGCTCTGAGGTTTAATGGAGGAGGCCACATCAACCACACCATCTTCTGGACAAACCTCTCTCCAAATGGCGGTGGAGAACCACAGGGTGAGCTGGCAGCGGCCATCAACCGTGACTTTGGCTCCTTCCAGGCATTGAAGGACAAGATGTCTGCCGCCACTGTGGCGGTCCAGGGCTCAGGCTGGGGCTGGCTGGGCTTCGACAAGGAGAGCGGGAAGCTCCGTATCACAGCCTGCCCTAATCAAGACCCACTGCAGGGAACCACAGGTCTGGTCCCCCTGCTGGGTATTGATGTGTGGGAGCATGCCTACTATCTACAGTACAAGAATGTCCGACCCGACTATGTCAAAGCCATCTGGAATGTCATCAACTGGGAGAACGTGAGCGAGCGCCTCCAGGCCGCCAAAAAGTAGACCACTGGCTCTTCCTTCCTGCCCCAAACCTTACCCCCGCAGACCTTACTACCTTAAGAGAGCACAAAATACCCTCTTAACCCAAATGAAGATAGCTGCTGTATACTGTACCAGAGAGAATATTCAGTCTAAAGCTGTTTGTTTGTCcgactaggtttccatccaattggcgacagattttcatgcgagtATTATAAAATCGGCATTAGAACAATGTGCATTTTCCCAcaagatgtttccatcaaattgacttgttgcaaaTGCTGTGCGTGATGACATTGCACATAAAAATACCATATGTGGTTAAATTCCCAAGTACCAAATAAAAAAGCAAGTTAAATGTGTTTCTATTGCATTGAAATCTAATGATGgttctaaaaaaaaatgttgcgtTGTATACCGAGTGTGTCCAGTCTTGTAATGTCACGTGTCCTCTAGTGCACGTATAGCTTACATGATAAGAATATTATAAACAAAAGAGCGAGAATTTTTATGTCAAACGGCAGACAAGCATTAAGCTCATCACCATGCACTTTCACCTCCCTGTGAAGTcttaatttatttaatctgtagactaataaactgcatgctttcccgatgAGTTGCAGTGGGATAACCGCACATATCATTCTGTGACTCAGTTGACTTCAATTAGATTGTAATGTTATCAATATTTTCTCATAAAAGCATTTCCACTGATATTTCTCGCATAAGTAATTTAATTACGATTTTCTGTTTCTATCAGGCCTGTCATTACTTCATTTTTTTATCAGACCTgtactttactcacataaaaaggttggatggaaacctggttagtgttgCACAGATATCAGGTAAATGTGATTGAGGCAAATGTTTTTGACGTGATATAATAAAATATTTAGTTTGAATTGTA

Function

GO:

id name namespace
GO:0046686 response to cadmium ion biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0051597 response to methylmercury biological_process
GO:0006801 superoxide metabolic process biological_process
GO:0004784 superoxide dismutase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K04564 SOD2; superoxide dismutase, Fe-Mn family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU800922 lncRNA downstream 2949 37779022 ~ 37779225 (-) True G704045
TU800920 lncRNA downstream 4020 37777744 ~ 37778154 (-) True G704043
TU800919 lncRNA downstream 4489 37777476 ~ 37777685 (-) True G704042
TU800916 lncRNA downstream 6913 37775056 ~ 37775261 (-) True G704039
TU800914 lncRNA downstream 10652 37771275 ~ 37771522 (-) True G704037
TU800941 lncRNA upstream 8607 37801335 ~ 37801564 (-) True G704057
TU800942 lncRNA upstream 9320 37802048 ~ 37802363 (-) True G704058
TU800945 lncRNA upstream 11296 37804024 ~ 37804247 (-) True G704061
TU800955 lncRNA upstream 20339 37813067 ~ 37813605 (-) True G704071
TU800956 lncRNA upstream 21269 37813997 ~ 37814205 (-) True G704072
XM_036985435.1 mRNA downstream 155214 37474229 ~ 37626960 (-) False LOC110530908
XM_036985432.1 mRNA downstream 155214 37477332 ~ 37626960 (-) False LOC110530908
XM_036985434.1 mRNA downstream 155214 37477332 ~ 37626960 (-) False LOC110530908
XM_036985431.1 mRNA downstream 155214 37477464 ~ 37626960 (-) False LOC110530908
XM_036985433.1 mRNA downstream 155214 37477464 ~ 37626960 (-) False LOC110530908
XM_021612541.2 mRNA upstream 25144 37817872 ~ 37851843 (-) False acbd3
XM_021612543.2 mRNA upstream 25144 37817872 ~ 37851844 (-) False acbd3
XM_021612544.2 mRNA upstream 25144 37817872 ~ 37851844 (-) False acbd3
XM_021612545.2 mRNA upstream 25144 37817872 ~ 37851844 (-) True acbd3
XM_021614211.2 mRNA upstream 66529 37859257 ~ 37879878 (-) True LOC110530910
TU800488 other downstream 290017 37489227 ~ 37492157 (-) True LOC110530908
TU800348 other downstream 420581 37355096 ~ 37361593 (-) True LOC110529880
TU798300 other downstream 1863999 35900623 ~ 35918175 (-) True G701618
TU798297 other downstream 1877902 35900623 ~ 35904272 (-) False G701618
TU798046 other downstream 2076861 35641355 ~ 35705313 (-) True LOC110529865
TU801610 other upstream 244997 38037725 ~ 38038346 (-) True G704702
TU801790 other upstream 520761 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 1426916 39219644 ~ 39226313 (-) True G706683
TU804129 other upstream 2164233 39956961 ~ 39959613 (-) True slc22a16
TU806574 other upstream 4927043 42719771 ~ 42720699 (-) True G709272

Expression Profile